Skip to main content

Advertisement

Table 2 Depth of coverage per individual across loci and plate pools

From: Next-generation sequencing for HLA typing of class I loci

Gene Exon Plate 1 Coverage Plate 2 Coverage Plate 3 Coverage Average coverage per locus
HLA-A 2 159 ± 87 65 ± 37 91 ± 60 106 ± 76
HLA-A 3 144 ± 61 71 ± 36 101 ± 52 106 ± 59
HLA-B 2 177 ± 74 89 ± 50 105 ± 56 125 ± 73
HLA-B 3 159 ± 72 93 ± 45 111 ± 54 121 ± 65
HLA-C 2 85 ± 44 62 ± 44 81 ± 66 76 ± 52
HLA-C 3 102 ± 50 70 ± 36 84 ± 50 85 ± 47
Average coverage per plate 137 ± 74 75 ± 43 95 ± 58 103 ± 65