Skip to main content

Table 5 Portions of the virtual genome map for tammar wallaby chromosome 5 (MEU5).

From: A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map

Marker (Human gene symbol)

Marker (Ensembl ID)a

Location (kb)

Confidence Levelb

Location (cM)

Location (band)

ptr

 

0

NA

0.00

p3

MAP3K15

ENSMODG00000009020

52

2

0.04

p3

. . . *

     

CXADR

ENSMODG00000020956

36862

2

29.53

p2

USP25

ENSMODG00000020954

37113

1

29.73

p2

NRIP1

ENSMODG00000020951

37474

1

30.02

p2

SAMSN1

ENSMODG00000020950

37623

2

30.14

p2

. . .

     

cen

 

66812

NA

53.52

cen

ASB9

ENSMODG00000017264

66989

1

53.64

q1

ASB11

ENSMODG00000017240

67067

1

53.69

q1

PIGA

ENSMODG00000017236

67096

1

53.71

q1

FIGF

ENSMODG00000017234

67131

1

53.73

q1

PIR

ENSMODG00000017232

67233

1

53.80

q1

BMX

ENSMODG00000017228

67298

1

53.84

q1

ACE2

ENSMODG00000017222

67358

1

53.88

q1

TMEM27

ENSMODG00000017212

67469

1

53.95

q1

CA5B

ENSMODG00000017209

67537

1

54.00

q1

ZRSR2

ENSMODG00000017202

67566

1

54.01

q1

AP1S2

ENSMODG00000017197

67589

1

54.03

q1

GRPR

ENSMODG00000017191

68033

1

54.32

q1

S100G

ENSMODG00000017180

68470

1

54.61

q1

CTPS2

ENSMODG00000017176

68521

2

54.64

q1

. . .

     

BREAKPOINT7

 

293771

NA

202.37

q3

MORN1

ENSG00000116151

293771

0

202.37

q3

RER1

ENSG00000157916

293824

0

202.41

q3

PEX10

ENSG00000157911

293834

0

202.41

q3

PLCH2

ENSG00000149527

293889

0

202.45

q3

PANK4

ENSG00000157881

293913

0

202.46

q3

HES5

ENSG00000197921

293928

0

202.47

q3

C1orf93

ENSG00000157870

293972

0

202.50

q3

MMEL1

ENSG00000142606

293975

0

202.50

q3

AL831784.17

ENSG00000215913

294014

0

202.53

q3

ACTRT2

ENSG00000169717

294291

0

202.71

q3

PRDM16

ENSG00000142611

294327

0

202.74

q3

TPRG1L

ENSG00000158109

294748

0

203.01

q3

WDR8

ENSG00000116213

294753

0

203.01

q3

TP73

ENSG00000078900

294769

0

203.03

q3

CCDC27

ENSG00000162592

294845

0

203.08

q3

LRRC47

ENSG00000130764

294866

0

203.09

q3

KIAA0562

ENSG00000116198

294892

0

203.11

q3

DFFB

ENSG00000169598

294925

2

203.13

q3

...

     

LENG8

ENSG00000167615

339572

2

232.41

q3

LENG9

ENSG00000182909

339581

0

232.42

q3

LAIR2

ENSG00000167618

339612

0

232.44

q3

FCAR

ENSG00000186431

339894

0

232.62

q3

GP6

ENSG00000088053

340000

0

232.68

qtr

qtr

 

340000

NA

232.68

qtr

  1. Markers in bold are also shown in the integrated map (Table 4)
  2. * "..." rows indicate where there are markers not listed in the table.
  3. a. ENSMODG = opossum; ENSG = human
  4. b. 2 = high: linkage and/or FISH-mapped tammar wallaby markers; 1 = medium: not mapped in the tammar wallaby but occurs in a block whose orientation could be deduced from tammar wallaby FISH-mapping data; 0 = low: neither mapped in tammar wallaby nor has any tammar wallaby evidence supporting an order.