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Table 2 List of genes found in the Cucumis melo chloroplast genome

From: Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin

RNA genes

     

   tRNAs

trnA-UGCa, b

trnC-GCA

trnD-GUC

trn E-UUC

trn F-GAA

 

trnfM-CAU

trnG-GCC

trnG-UCCa

trn H-GUG

trn I-CAUb

 

trnI-GAUa, b

trnK-UUUa

trnL-CAAb

trn L-UAAa

trn L-UAG

 

trnM-CAU

trnN-GUUb

trnP-UGG

trn Q-UUG

trn R-ACGb

 

trnR-UCU

trnS-GCU

trnS-GGA

trn S-UGA

trn T-GGU

 

trnT-UGU

trnV-GACb

trnV-UACa

trn W-CCA

trn Y-GUA

   rRNAs

rrn16 b

rrn23 b

rrn4.5 b

rrn 5b

 

Photosynthesis genes

     

   Acetyl-coa carboxylase

accD

    

   ATP-dependent protease

clpP c

    

   ATP synthase

atpA

atpB

atpE

atpF a

atpH

 

atpI

    

   Cytochrome b / f

petA

petB a

petD a

petG

petL

 

petN

    

   Cytochrome c biogenesis

ccsA

    

   NADH dehydrogenase

ndhA a

ndhB a, b

ndhC

ndhD

ndhE

 

ndhF

ndhG

ndhH

ndhI

ndhJ

 

ndhK

    

   Photosystem I

psaA

psaB

psaC

psaI

psaJ

   Photosystem II

psbA

psbB

psbC

psbD

psbE

 

psbF

psbH

psbI

psbJ

psbK

 

psbL

psbM

psbN

psbT

psbZ

   Rubisco

rbcL

    

Other genes

     

   Conserved ORFs

ycf1

ycf1-liked

ycf2 b

ycf3 c

ycf4

 

ORF70b, e

    

   Transl. initiation factor

infA

    

   Intron maturase

matK

    

   Membrane protein

cemA

    

   Ribosomal proteins

rpl14

rpl16 a

rpl2 a, b

rpl20

rpl22

 

rpl23 b

rpl32

rpl33

rpl36

rps2

 

rps3

rps4

rps7 b

rps8

rps11

 

rps12 b, c, f

rps14

rps15

rps16 a

rps18

 

rps19

    

   RNA polymerase

rpoA

rpoB

rpoC1 a

rpoC2

 
  1. aGene that contains one intron
  2. bTwo gene copies due to IR
  3. cGene that contains two introns
  4. dycf 1 spans an inverted repeat region (IRa) and the adjacent small single-copy region (SSC). ycf1-like is a truncated form of ycf1 that occurs in the inverted repeat region IRb.
  5. eEncodes a putative protein similar to ycf15 from Lactuca sativa (ABD47292.1) and Helianthus annuus (ABD47205.1)
  6. fGene that undergoes trans-splicing