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Table 2 All 'Tnf'-related genes in the molecular optic nerve head dataset

From: Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data

Searched Symbol Representative Probe Set ID Num Probe Sets FC for Stage 1 QV for Stage 1 FC for Stage 2 QV for Stage 2 FC for Stage 3 QV for Stage 3 FC for Stage 4 QV for Stage 4 FC for Stage 5 QV for Stage 5
Tnfaip8l2 Tnfaip8l2 1452948_at 1 1.595 0.0182 2.084 0.0008 2.093 0.0002 2.113 0.002 1.75 0.0033
TNFR60 Tnfrsf1a 1417291_at 1 1.356 0.0512 1.731 0.0008 1.86 0.0002 1.897 0.0006 1.688 0.0018
tnfb94 Tnfaip2 1438855_x_at 3 1.716 0.0183 2.109 0.0002 1.823 0.0021 1.539 0.0237 1.653 0.0126
Tnfrsf9 Tnfrsf9 1460469_at 3 1.512 0.0677 1.73 0.0002 2.921 0.0003 2.816 0.0005 1.807 0.005
TNF-alphaR2 Tnfrsf1b 1418099_at 2 1.721 0.0831 2.098 0.0012 1.656 0.0078 2.381 0.002 2.264 0.0018
TNFCR Ltbr 1416435_at 1 1.269 0.1862 1.667 0.0001 1.6 0.0015 1.564 0.0002 1.316 0.0081
Tnfrsf11b Tnfrsf11b 1449033_at 2 1.872 0.1393 1.93 0.0106 1.614 0.0357 2.285 0.0099 2.354 0.0033
Tnfaip8 Tnfaip8 1416950_at 1 1.376 0.1972 1.548 0.0037 1.292 0.0629 1.701 0.0074 1.589 0.0085
Tnfsf13b Tnfsf13b 1460255_at 3 1.399 0.2727 1.622 0.0009 1.776 0.0044 1.652 0.0088 1.826 0.0024
Tnfaip6 Tnfaip6 1418424_at 1 1.66 0.2211 1.643 0.0739 2.088 0.0086 4.611 0.0003 2.737 0.0031
Tnfrsf13b Tnfrsf13b 1423182_at 1 1.284 0.272 1.79 0.0003 1.34 0.0408 2.029 0.0007 1.679 0.0066
Tnfip1 Tnfaip1 1448863_a_at 3 1.113 0.3315 1.295 0.0027 1.297 0.0015 1.469 0.0006 1.263 0.0025
Tnfrsf22 Tnfrsf22 1426095_a_at 4 1.331 0.3691 1.681 0.0098 1.672 0.0141 1.95 0.0048 1.537 0.009
Tnfrsf6 Fas 1460251_at 5 1.228 0.4172 1.545 0.0041 1.831 0.0038 1.755 0.0048 1.982 0.0025
Tnfrsf21 Tnfrsf21 1450731_s_at 2 1.166 0.3452 1.251 0.0098 1.363 0.0039 1.275 0.0225 1.218 0.0779
Tnfrsf12a Tnfrsf12a 1418571_at 2 1.301 0.3733 1.497 0.0759 2.851 0.0003 3.947 0.0002 1.941 0.0102
Tnfaip9 Steap4 1460197_a_at 2 1.177 0.5803 1.734 0.0044 1.576 0.0295 1.563 0.0477 1.832 0.0061
Tnfrsf5 Cd40 1439221_s_at 3 1.144 0.4776 1.238 0.0049 1.438 0.0067 1.72 0.0057 1.122 0.183
Tnfrsf10b Tnfrsf10b 1421296_at 2 1.335 0.3902 1.694 0.0074 1.609 0.0227 1.651 0.0194 1.099 0.3627
Tnfsf13 Tnfsf13 1418345_at 1 1.077 0.721 1.357 0.0094 1.328 0.0281 1.303 0.0875 1.431 0.0147
Tnfip3 Tnfaip3 1433699_at 2 -1.182 0.5997 -1.476 0.0076 -1.295 0.1286 -1.459 0.0288 -1.187 0.1717
Tnfrsf11a Tnfrsf11a 1430259_at 2 1.105 0.5704 1.279 0.022 1.092 0.2354 1.252 0.1037 1.207 0.1559
Tnfa Tnf 1419607_at 1 1.068 0.6746 1.164 0.1341 1.173 0.2162 1.197 0.0413 1.157 0.088
Tnfsf10 Tnfsf10 1459913_at 3 1.231 0.432 1.399 0.014 1.102 0.4007 1.134 0.3464 1.809 0.0027
Tnfrsf19 Tnfrsf19 1448147_at 3 1.281 0.2536 1.536 0.0052 1.023 0.5083 1.176 0.3387 1.208 0.0931
Tnfrsf13c Tnfrsf13c 1419307_at 1 1.084 0.7361 1.172 0.2768 -1.554 0.0445 -1.61 0.0562 -1.395 0.0958
Tnfrsf18 Tnfrsf18 1422303_a_at 1 1.113 0.5149 1.268 0.053 1.24 0.0632 1.114 0.2903 1.072 0.2896
Tnfsf3l Pglyrp1 1449184_at 1 -1.022 0.7984 1.241 0.1306 1.401 0.0694 1.273 0.1955 -1.363 0.099
TNF-beta Lta 1420353_at 1 1.165 0.3119 1.054 0.3871 1.059 0.3635 1.118 0.2847 1.194 0.0614
Tnfrsf14 Tnfrsf14 1452425_at 1 1.034 0.7298 1.181 0.0819 1.08 0.2514 1.075 0.3767 1.196 0.0106
Tnfsf14 Tnfsf14 1450298_at 2 1.11 0.4399 1.213 0.0478 1.05 0.4048 1.192 0.161 1.037 0.4038
Tnfsf8 Tnfsf8 1450272_at 2 1.049 0.682 1.146 0.1413 1.105 0.2307 1.128 0.1819 1.076 0.3008
Tnfsf7 Cd70 1449926_at 1 1.075 0.6845 1.202 0.1024 1.09 0.3569 1.54 0.023 -1.028 0.439
Tnfsf11 Tnfsf11 1419083_at 2 1.121 0.65 1.3 0.1171 1.144 0.2947 1.013 0.5497 1.517 0.0236
Tnfrsf16 Ngfr 1454903_at 3 -1.085 0.6105 1.019 0.5138 1.023 0.5083 -1.606 0.0053 -1.449 0.0062
Tnfsf6 Fasl 1449235_at 2 1.037 0.7033 1.133 0.1216 1.115 0.2646 1.016 0.5184 1.253 0.05
Tnfrsf7 Cd27 1452389_at 1 1.05 0.6727 1.168 0.1289 1.177 0.165 1.098 0.2723 -1.001 0.4951
Tnfrsf25 Tnfrsf25 1422231_a_at 1 1.081 0.5818 1.112 0.2304 1.071 0.3705 1.086 0.353 -1.03 0.434
Tnfsf4 Tnfsf4 1421744_at 1 1.014 0.7928 1.112 0.2484 1.055 0.3972 1.045 0.4892 1.284 0.0442
Tnfsf5 Cd40lg 1422283_at 1 -1.032 0.7476 -1.093 0.1604 -1 0.546 -1.014 0.5263 1.187 0.0304
Tnfsf9 Tnfsf9 1422924_at 1 1.036 0.7722 1.119 0.3593 1.145 0.3207 -1.027 0.5346 1.363 0.0246
Tnfrsf23 Tnfrsf23 1422101_at 1 -1.003 0.814 1.024 0.5169 1.035 0.4692 1.268 0.1378 1.215 0.109
Tnfaip8l1 Tnfaip8l1 1449125_at 1 1.039 0.7492 1.073 0.3754 1.114 0.231 1.118 0.3217 1.039 0.3833
Tnfsf3 Ltb 1419135_at 1 -1.076 0.7049 1.057 0.3884 1.026 0.4906 1.142 0.2959 -1.122 0.2268
Tnfrsf19l Relt 1455116_at 1 -1.055 0.7184 -1.009 0.5445 -1.151 0.1717 -1.124 0.3145 -1.043 0.4081
Tnfsf12 Tnfsf12 1452440_at 1 1.03 0.7513 -1.05 0.4461 1.066 0.3841 1.094 0.3333 1.107 0.2445
Tnfsf5ip1 Psmg2 1425373_a_at 2 -1.067 0.6716 -1.082 0.3645 1.119 0.1569 1.013 0.5411 -1.017 0.4574
Tnfrsf13 Tnfrsf17 1420782_at 1 -1.072 0.6676 -1.051 0.4316 -1.087 0.37 -1.033 0.5123 1.062 0.3875
Tnfrsf4 Tnfrsf4 1420351_at 1 -1.041 0.7555 -1.019 0.5272 1.047 0.4614 1.022 0.5351 1.031 0.4478
Tnfrsf8 Tnfrsf8 1421649_at 1 -1.002 0.8147 -1.005 0.5523 -1.028 0.4824 -1.001 0.5686 -1.051 0.3787
  1. FC = Fold change, QV = Q value