From: Analysis of high-identity segmental duplications in the grapevine genome
chr | chr_size (bp) | dup_size (bp) | perc_dup | # dup intervals |
---|---|---|---|---|
chr1 | 23,037,639 | 2,733,492 | 11.87% | 94 |
chr2 | 18,779,844 | 3,032,687 | 16.15% | 104 |
chr3 | 19,341,862 | 3,860,663 | 19.96% | 132 |
chr4 | 23,867,706 | 3,301,331 | 13.83% | 118 |
chr5 | 25,021,643 | 3,688,952 | 14.74% | 125 |
chr6 | 21,508,407 | 2,864,816 | 13.32% | 89 |
chr7 | 21,026,613 | 2,334,595 | 11.10% | 80 |
chr8 | 22,385,789 | 2,028,352 | 9.06% | 86 |
chr9 | 23,006,712 | 5,694,956 | 24.75% | 167 |
chr10 | 18,140,952 | 3,413,632 | 18.82% | 111 |
chr11 | 19,818,926 | 2,155,608 | 10.88% | 82 |
chr12 | 22,702,307 | 4,358,297 | 19.20% | 143 |
chr13 | 24,396,255 | 4,592,630 | 18.83% | 139 |
chr14 | 30,274,277 | 4,521,418 | 14.93% | 159 |
chr15 | 20,304,914 | 4,479,245 | 22.06% | 134 |
chr16 | 22,053,297 | 5,531,029 | 25.08% | 149 |
chr17 | 17,126,926 | 2,453,620 | 14.33% | 91 |
chr18 | 29,360,087 | 4,551,888 | 15.50% | 147 |
chr19 | 24,021,853 | 5,810,980 | 24.19% | 173 |
Tot_nonrandom | 426,176,009 | 71,408,191 | 16.76% | 2,323 |
chr1_random | 568,933 | 136,397 | 23.97% | 2 |
chr3_random | 1,220,746 | 297,331 | 24.36% | 9 |
chr4_random | 76,237 | 0 | 0.00% | 0 |
chr5_random | 421,237 | 0 | 0.00% | 0 |
chr7_random | 1,447,032 | 140,206 | 9.69% | 5 |
chr9_random | 487,831 | 137,370 | 28.16% | 4 |
chr10_random | 789,605 | 303,818 | 38.48% | 3 |
chr11_random | 282,498 | 0 | 0.00% | 0 |
chr12_random | 1,566,225 | 403,711 | 25.78% | 10 |
chr13_random | 3,268,264 | 1,079,980 | 33.04% | 28 |
chr16_random | 740,079 | 672,372 | 90.85% | 8 |
chr17_random | 829,735 | 126,189 | 15.21% | 4 |
chr18_random | 5,170,003 | 1,365,584 | 26.41% | 36 |
Tot_random | 16,868,425 | 4,662,958 | 27.64% | 109 |
Tot_placed | 443,044,434 | 76,071,149 | 17.17% | 2,432 |
chrUn | 43,154,196 | 8,876,440 | 20.57% | 210 |
Tot_whole | 486,198,630 | 84,947,589 | 17.47% | 2,642 |