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Table 1 Segmental duplications in the grapevine genome

From: Analysis of high-identity segmental duplications in the grapevine genome

chr chr_size (bp) dup_size (bp) perc_dup # dup intervals
chr1 23,037,639 2,733,492 11.87% 94
chr2 18,779,844 3,032,687 16.15% 104
chr3 19,341,862 3,860,663 19.96% 132
chr4 23,867,706 3,301,331 13.83% 118
chr5 25,021,643 3,688,952 14.74% 125
chr6 21,508,407 2,864,816 13.32% 89
chr7 21,026,613 2,334,595 11.10% 80
chr8 22,385,789 2,028,352 9.06% 86
chr9 23,006,712 5,694,956 24.75% 167
chr10 18,140,952 3,413,632 18.82% 111
chr11 19,818,926 2,155,608 10.88% 82
chr12 22,702,307 4,358,297 19.20% 143
chr13 24,396,255 4,592,630 18.83% 139
chr14 30,274,277 4,521,418 14.93% 159
chr15 20,304,914 4,479,245 22.06% 134
chr16 22,053,297 5,531,029 25.08% 149
chr17 17,126,926 2,453,620 14.33% 91
chr18 29,360,087 4,551,888 15.50% 147
chr19 24,021,853 5,810,980 24.19% 173
Tot_nonrandom 426,176,009 71,408,191 16.76% 2,323
chr1_random 568,933 136,397 23.97% 2
chr3_random 1,220,746 297,331 24.36% 9
chr4_random 76,237 0 0.00% 0
chr5_random 421,237 0 0.00% 0
chr7_random 1,447,032 140,206 9.69% 5
chr9_random 487,831 137,370 28.16% 4
chr10_random 789,605 303,818 38.48% 3
chr11_random 282,498 0 0.00% 0
chr12_random 1,566,225 403,711 25.78% 10
chr13_random 3,268,264 1,079,980 33.04% 28
chr16_random 740,079 672,372 90.85% 8
chr17_random 829,735 126,189 15.21% 4
chr18_random 5,170,003 1,365,584 26.41% 36
Tot_random 16,868,425 4,662,958 27.64% 109
Tot_placed 443,044,434 76,071,149 17.17% 2,432
chrUn 43,154,196 8,876,440 20.57% 210
Tot_whole 486,198,630 84,947,589 17.47% 2,642
  1. Size and percentage of segmentally duplicated regions and the number of duplicated intervals for: each chromosome, all nonrandom chromosomes (Tot_nonrandom, from chr1 to chr19), all random chromosomes (Tot_random, from chr1_random to chr18_random), all nonrandom and random chromosomes (Tot_placed), and the whole genome (Tot_whole).