From: Analysis of high-identity segmental duplications in the grapevine genome
chr | total genes | full dup genes | chr gene density | full dup gene density | ratio of densities |
---|---|---|---|---|---|
chr1 | 1,399 | 72 | 6.07 | 2.63 | 0.43 |
chr2 | 976 | 93 | 5.20 | 3.07 | 0.59 |
chr3 | 1,104 | 143 | 5.71 | 3.70 | 0.65 |
chr4 | 1,363 | 95 | 5.71 | 2.88 | 0.50 |
chr5 | 1,435 | 138 | 5.74 | 3.74 | 0.65 |
chr6 | 1,289 | 66 | 5.99 | 2.30 | 0.38 |
chr7 | 1,357 | 59 | 6.45 | 2.53 | 0.39 |
chr8 | 1,488 | 67 | 6.65 | 3.30 | 0.50 |
chr9 | 1,136 | 166 | 4.94 | 2.91 | 0.59 |
chr10 | 842 | 100 | 4.64 | 2.93 | 0.63 |
chr11 | 1,082 | 57 | 5.46 | 2.64 | 0.48 |
chr12 | 1,263 | 175 | 5.56 | 4.02 | 0.72 |
chr13 | 1,281 | 150 | 5.25 | 3.27 | 0.62 |
chr14 | 1,625 | 153 | 5.37 | 3.38 | 0.63 |
chr15 | 957 | 122 | 4.71 | 2.72 | 0.58 |
chr16 | 1,048 | 140 | 4.75 | 2.53 | 0.53 |
chr17 | 1,006 | 54 | 5.87 | 2.20 | 0.37 |
chr18 | 1,796 | 143 | 6.12 | 3.14 | 0.51 |
chr19 | 1,200 | 192 | 5.00 | 3.30 | 0.66 |
Tot_nonrandom | 23,647 | 2,185 | 5.55 | 3.06 | 0.55 |
chr1_random | 7 | 1 | 1.23 | 0.73 | 0.60 |
chr3_random | 28 | 7 | 2.29 | 2.35 | 1.03 |
chr4_random | 5 | - | 6.56 | - | - |
chr5_random | 10 | - | 2.37 | - | - |
chr7_random | 73 | 8 | 5.04 | 5.71 | 1.13 |
chr9_random | 4 | 2 | 0.82 | 1.46 | 1.78 |
chr10_random | 52 | 12 | 6.59 | 3.95 | 0.60 |
chr11_random | 11 | - | 3.89 | - | - |
chr12_random | 36 | 6 | 2.30 | 1.49 | 0.65 |
chr13_random | 156 | 47 | 4.77 | 4.35 | 0.91 |
chr16_random | 28 | 26 | 3.78 | 3.87 | 1.02 |
chr17_random | 15 | 3 | 1.81 | 2.38 | 1.32 |
chr18_random | 211 | 44 | 4.08 | 3.22 | 0.79 |
Tot_random | 636 | 156 | 3.77 | 3.35 | 0.89 |
Tot_placed | 24,283 | 2,341 | 5.48 | 3.08 | 0.56 |
chrUn | 2,063 | 248 | 4.78 | 2.79 | 0.58 |
Tot_whole | 26,346 | 2,589 | 5.42 | 3.05 | 0.56 |