Skip to main content
Figure 2 | BMC Genomics

Figure 2

From: Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

Figure 2

Circular representation of the P. aeruginosa M18 genome. The chromosome representation was constructed by GenomeViz [75]. Starting from the outermost circle going inwards: the outermost circles indicate coding sequence (CDS) in plus (circle 1) and minus (circle 2) strands are colored by functional categories, as follows: energy production and conversion (orange); cell division and chromosome partitioning (dark orange); amino acid transport and metabolism (maroon); nucleotide transport and metabolism (antique white); carbohydrate transport and metabolism (yellow); coenzyme metabolism (pink); lipid metabolism (tomato); translation, ribosomal structure and biogenesis (peach); transcription (medium purple); DNA replication, recombination and repair (red); cell envelope biogenesis and outer membrane (green); cell motility and secretion (deep pink); posttranslational modification, protein turnover and chaperones (pale green); inorganic ion transport and metabolism (royal blue); secondary metabolites biosynthesis, transport and catabolism (blue); general function prediction only (dodger blue); function unknown (sky blue); signal transduction mechanisms (cyan); intracellular trafficking and secretion (light blue); defense mechanisms (medium purple). Circle 3 indicates temperature-dependent CDSs colored by fold change of transcriptional level, as follows: up-regulated by more than 5-fold (blue); between 5- and 4-fold (light blue); between 4- and 3-fold (green); between 3- and 2-fold (cyan) at 28°C compared with that at 37°C; transcriptional level down-regulated more than 5-fold (red); between 5- and 4-fold (orange); between 4- and 3-fold (pink); between 3- and 2-fold (yellow) at 28°C compared with that at 37°C. Circle 4 indicates genomic islands in M18, colored by prophage (blue) and genomic islands (yellow). Circle 5 represents integrase genes (tomato), transposase genes (light blue) and DNA recombinase genes (dodger blue). Circle 6 represents RNA genes colored by tRNA (blue), rRNA (red), and small RNA (green). Circles 7 and circle 8 represent the GC content and skew, respectively.

Back to article page