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Figure 4 | BMC Genomics

Figure 4

From: Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

Figure 4

Genomic islands, prophages, IS and CRISPR loci in strain M18. A) Genomic islands (GIs) and prophages in the M18 genome. MGI-I contains mod and res genes coding for type III DNA restriction and modification system (RM) and the genes similar to those in Pseudomonas putida GB-1 (red), Pseudomonas syringae pv. Tabaci (ATCC11528) (deep green) and Stenotrophomonas sp. SKA14 (blue). MGI-II contains genes hsdR, hsdM and hsdS encoding for type I DNA RM and the genes similar to those in Nitrosomonas europaea (ATCC 19718) (green) and P. aeruginosa PA14 (orange). In MGI-III to V, genes similar to P. aeruginosa LESB58 (yellow); P. aeruginosa PAK (light blue) and the genes which had no significant similarity to other published genes in P. aeruginosa (white), The star symbol in MGI-III indicates the frameshift site in the pltB gene in LESB58. In prophages, yellow represents genes similar to P. aeruginosa LESB58 (share over 30% identity); white represents genes that have no significant similarity to P. aeruginosa LESB58. B) The chromosomal organization of insertion sequences (ISs) and clustered, regularly interspaced short palindromic repeats (CRISPRs) with CRISPR-associated (cas) genes. In the IS loci, black boxes represent invert repeat (IR) sequences; IS coding genes are located between the two black boxes. The M18 genomic region between CRISPR-2 and CRISPR-3 covered the ORFs from PAM18_2613-PAM18_2618 and name of each are designated. Black boxes indicate the repeat sequence; gray boxes indicate the spacer sequences with over 70% identical sequences to other P. aeruginosa genome sequences; white boxes represent the spacers with dissimilar sequences to other P. aeruginosa strains.

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