Figure 4From: Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18Genomic islands, prophages, IS and CRISPR loci in strain M18. A) Genomic islands (GIs) and prophages in the M18 genome. MGI-I contains mod and res genes coding for type III DNA restriction and modification system (RM) and the genes similar to those in Pseudomonas putida GB-1 (red), Pseudomonas syringae pv. Tabaci (ATCC11528) (deep green) and Stenotrophomonas sp. SKA14 (blue). MGI-II contains genes hsdR, hsdM and hsdS encoding for type I DNA RM and the genes similar to those in Nitrosomonas europaea (ATCC 19718) (green) and P. aeruginosa PA14 (orange). In MGI-III to V, genes similar to P. aeruginosa LESB58 (yellow); P. aeruginosa PAK (light blue) and the genes which had no significant similarity to other published genes in P. aeruginosa (white), The star symbol in MGI-III indicates the frameshift site in the pltB gene in LESB58. In prophages, yellow represents genes similar to P. aeruginosa LESB58 (share over 30% identity); white represents genes that have no significant similarity to P. aeruginosa LESB58. B) The chromosomal organization of insertion sequences (ISs) and clustered, regularly interspaced short palindromic repeats (CRISPRs) with CRISPR-associated (cas) genes. In the IS loci, black boxes represent invert repeat (IR) sequences; IS coding genes are located between the two black boxes. The M18 genomic region between CRISPR-2 and CRISPR-3 covered the ORFs from PAM18_2613-PAM18_2618 and name of each are designated. Black boxes indicate the repeat sequence; gray boxes indicate the spacer sequences with over 70% identical sequences to other P. aeruginosa genome sequences; white boxes represent the spacers with dissimilar sequences to other P. aeruginosa strains.Back to article page