Skip to main content

Table 2 Expression ratios and statistical significances from the microarray and RT-qPCR data

From: A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.)

Microarray   DOA (WT/Mutant) 8 DPA (WT/Mutant) 12 DPA (WT/Mutant)
Probesets ID Blastx Sequence Description Microarray RT-qPCR Microarray RT-qPCR Microarray RT-qPCR
Ghi.2036.1.S1_s_at Cu/Zn superoxide dismutase (GhCSD1) 1.48* 1.80* 2.52* 5.22* 1.78* 4.72*
Ghi.1711.1.S1_s_at Putative SANT/MYB Transcription Factor 0.80* 0.51* 0.19* 0.65 0.16* 0.34*
Ghi.3235.1.A1_at Putative UDP-glycosyltransferase (UGT73C2) 0.72* 0.53 0.03* 0.0077* 0.23* 0.033*
Ghi.4377.1.A1_at Glycuronosyltransferase-like protein 0.78* 0.67 3.83* 7.85* 1.20* 2.67*
Ghi.6551.1.S1_at BZIP domain class transcription factor 0.72* 0.57* 1.90* 2.59* 2.94* 1.84*
Ghi.7279.1.S1_at Putative ABC transporter 1.43* 1.22* 3.82* 6.86* 6.03* 5.44*
Ghi.7450.1.S1_s_at ECERIFERUM 3 (CER3) 0.79* 0.81 2.31* 2.35* 3.17* 1.64*
Ghi.7724.1.S1_at Cellulose-synthase-like C5 (AtCSLC5) 0.98* 0.67* 2.44* 5.96* 4.37* 3.97*
Ghi.8115.1.S1_s_at Transcription factor GhMYB109 0.97* 0.71* 5.02* 3.45* 7.80* 4.67*
Ghi.8665.1.S1_s_at Sucrose synthase 1.17 1.05 0.72 0.53 1.11 0.64
Ghi.9209.1.S1_at Putative R2R3-Myb transcription factor 0.94* 1.30 0.27 0.60 0.53 1.00
Ghi.9236.1.S1_at Putative UDP-glycosyltransferase (UGT73C5/DOGT1) 0.92* 0.25* 0.08* 0.0035* 0.55 0.0083*
Gra.2056.1.A1_s_at Beta-galactosidase 0.41* 0.13 39.90* 101.53* 41.57* 38.62*
  1. * Microarray data: significant at the Bonferroni-corrected 0.05 probability level; RT-qPCR data: significant at the 0.05 probability
  2. level as determined by two-tailed paired t-test for means. Microarray and RT-qPCR data significant at ≥ 2-fold difference in transcript abundance are shown in boldface and underlined.