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Table 3 Statistics of watermelon unigenes with sequence matches against public protein databases

From: Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

Database E value Contig Singleton Total
NCBI nr 1e-5 29,550 (67.9%) 11,695 (37.1%) 41,245 (54.9%)
  1e-20 16,496 (37.9%) 4,152 (13.2%) 20,648 (27.5%)
  1e-50 3,933 (9%) 460 (1.5%) 4,393 (5.9%)
cucumber protein 1e-5 33,708 (77.4%) 15,716 (49.9%) 49,424 (65.8%)
  1e-20 23,692 (54.4%) 7,672 (24.3%) 31,364 (41.8%)
  1e-50 7,969 (18.3) 1,241 (3.9%) 9,210 (12.3%)
Arabidopsis protein 1e-5 29,409 (67.5%) 11,925 (37.8%) 41,334 (55.1%)
  1e-20 17,433 (40%) 4,501 (14.3%) 21,934 (29.2%)
  1e-50 4,516 (10.4%) 473 (1.5%) 4,989 (6.6%)
rice protein 1e-5 28,107 (64.5%) 10,843 (34.4%) 38,950 (51.9%)
  1e-20 15,769 (36.2%) 3,833 (12.2%) 19,602 (26.1%)
  1e-50 3,944 (9.1%) 336 (1.1%) 4,280 (5.7%)
  1. Note: percentages of contigs, singletons and total unigenes were calculated from total numbers of contigs (43,544), singletons (31,524) and unigenes (75,068), respectively.