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Table 1 List of P. maxima ESTs associated with each cluster

From: Spatial analysis of biomineralization associated gene expression from the mantle organ of the pearl oyster Pinctada maxima

 

Transcript Name and Accession No.

Description of Best Sequence Hit

E-value

 

PM078: GH280038

AB032612: Pinctada maxima mRNA for N14 matrix protein

0

 

PM086: GH280046

DQ352042: Pinctada margaritifera calconectin mRNA

1E-177

 

PM039: GH279999

EF183520: Pinctada margaritifera linkine mRNA

1E-154

 

PM072: GH280032

AB032612: Pinctada maxima mRNA for N14 matrix protein

1E-137

 

PM070: GH280030

D86074: Pinctada fucata mRNA for MSI60 protein

4E-55

Cluster A

PM076: GH280036

Q3YL58: Pinctada fucata mantle gene 8

5E-34

 

PM061: GH280021

Q642M8: Danio rerio dehydrogenease/reductase

3E-32

 

PM074: GH280034

Q86GA3: Crassostrea gigas paramyosin protein (fragment).

3E-28

 

PM075: GH280035

ABF48089: Pinctada fucata EF-hand calcium-binding protein

1E-23

 

PM053: GH280013

Q6TL28: Chlamys farreri. beta tubulin (fragment)

3E-21

 

PM058: GH280018

Q3YL58: Pinctada fucata mantle gene 8

2E-18

 

PM077: GH280037

Q16UT3: Aedes aegypti papilin protein

2E-16

 

PM044: GH280004

EDP33798: Brugia malayi pancreatic trypsin inhibitor protein

8E-14

 

PM306: GH738500

AF547223: Pinctada fucata ferritin-like protein mRNA

0

 

PM124: GH280084

AF547223: Pinctada fucata ferritin-like protein mRNA

1E-152

 

PM134: GH280094

AF526224: Argopecten irradians ribosomal protein S15

1E-38

 

PM113: GH280073

Q27123: Urechis caupo cytochrome c oxidase subunit iv

1E-31

 

PM120: GH280080

AF379610: Biomphalaria glabrata ezrin/radixin/moesin mRNA

2E-31

 

PM119: GH280079

AJ561118: Crassostrea gigas ribosomal protein S25

3E-26

Cluster B

PM114: GH280074

AB076927: Geloina erosa cytochrome c oxidase subunit I

7E-25

 

PM105: GH280065

ABW90366: Sipunculus nudus ribosomal protein L35

1E-20

 

PM087: GH280047

AJ563462: Crassostrea gigas ribosomal protein L9

5E-20

 

PM137: GH280097

AJ563466: Crassostrea gigas ribosomal protein L31

2E-18

 

PM313: GH738507

A6N9W3: Ornithodoros parkeri ribosomal protein S29

2E-15

 

PM102: GH280062

Q8M0B7: Amoebidium parasiticum cytochrome c oxidase subunit 2

2E-09

 

PM092: GH280052

AJ243849: Sus scrofa mRNA for glutathione peroxidase

3E-09

 

PM307: GH738501

DQ018828: Argiope versicolor cytochrome oxidase subunit II

0.0006

 

PM104: GH280064

Q7YW83: Pinctada fucata ferritin-like protein

0.002

 

PM225: GH280185

Q287T6: Pinctada fucata tyrosinase

1E-133

 

PM233: GH280193

ABO87298: Pinctada margaritifera KRMP-5

2E-15

 

PM234: GH280194

Q1AGV8: Pinctada fucata KRMP-3 protein

3E-15

Cluster D

PM236: GH280196

Q1AGV8: Pinctada fucata KRMP-3 protein

8E-14

 

PM238: GH280198

Q6T6C2: Theromyzon tessulatum theromacin

1E-13

 

PM235: GH280195

ABP57445: Pinctada margaritifera KRMP-7

1E-12

 

PM244: GH280204

Q1AGV9: Pinctada fucata KRMP-2 protein

2E-10

 

PM239: GH280199

Q1AGW0: Pinctada fucata KRMP-1 protein

0.0004

 

PM226: GH280186

ABP57445: Pinctada margaritifera KRMP-7

0.044

 

PM270: GH280230

AB429367: Pinctada maxima shematrin-3 mRNA

0

 

PM274: GH280234

AB429365: Pinctada maxima shematrin-1 mRNA

1E-127

 

PM264: GH280224

EF160119: Pinctada margaritifera shematrin-8 mRNA

1E-112

 

PM262: GH280222

AB429365: Pinctada maxima shematrin-1 mRNA

1E-103

 

PM255: GH280215

AB429365: Pinctada maxima shematrin-1 mRNA

5E-90

 

PM276: GH280236

EF183519: Pinctada margaritifera KRMP-6 mRNA

1E-84

 

PM277: GH280237

EF183519: Pinctada margaritifera KRMP-6 mRNA

2E-84

 

PM273: GH280233

AB429365: Pinctada maxima shematrin-1 mRNA

8E-84

 

PM275: GH280235

EF183519: Pinctada margaritifera KRMP-6 mRNA

5E-82

 

PM281: GH280241

EF183519: Pinctada margaritifera KRMP-6 mRNA

2E-75

Cluster E

PM260: GH280220

EF192240: Pinctada margaritifera KRMP-7 mRNA

6E-75

 

PM268: GH280228

EF183519: Pinctada margaritifera KRMP-6 mRNA

9E-73

 

PM280: GH280240

EF183519: Pinctada margaritifera KRMP-6 mRNA

1E-69

 

PM258: GH280218

EF183519: Pinctada margaritifera KRMP-6 mRNA

1E-69

 

PM279: GH280239

EF183519: Pinctada margaritifera KRMP-6 mRNA

2E-69

 

PM278: GH280238

EF183519: Pinctada margaritifera KRMP-6 mRNA

3E-67

 

PM245: GH280205

AB429365: Pinctada maxima shematrin-1 mRNA

4E-63

 

PM247: GH280207

AM408910: Prunus necrotic ringspot virus coat protein

1E-60

 

PM269: GH280229

Q45TK0: Pinctada fucata mantle protein 10

4E-53

 

PM248: GH280208

AB429365: Pinctada maxima shematrin-1 mRNA

6E-41

 

PM246: GH280206

EF160120: Pinctada margaritifera shematrin-9 mRNA

2E-35

 

PM266: GH280226

ABP57445: Pinctada margaritifera KRMP-7 protein

6E-17

 

PM261: GH280221

ABO87299: Pinctada margaritifera KRMP-6 protein

2E-14

 

PM272: GH280232

Q1MW94: Pinctada fucata shematrin-3 protein

4E-13

 

PM254: GH280214

AB429365: Pinctada maxima shematrin-1 mRNA

6E-12

 

PM265: GH280225

Q27212: Pseudomicrothorax dubius articulin protein

0.001

  1. A list of P. maxima mantle ESTs with significant sequence similarity to annotated genes and proteins. These ESTs are significantly differentially expressed (P < 0.001) among specific regions of the mantle and have been clustered according to similar expression profiles: cluster A, B, D and E. Description of best sequence hit = highest sequence comparison match of ESTs with Blastx or Blastn search tools, including accession number and brief identification of matching sequence. E-valve = likelihood of random occurrence of sequence match, values approaching zero indicate increasing sequence match significance.
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BMC Genomics

ISSN: 1471-2164

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