Skip to main content

Table 1 List of P. maxima ESTs associated with each cluster

From: Spatial analysis of biomineralization associated gene expression from the mantle organ of the pearl oyster Pinctada maxima

  Transcript Name and Accession No. Description of Best Sequence Hit E-value
  PM078: GH280038 AB032612: Pinctada maxima mRNA for N14 matrix protein 0
  PM086: GH280046 DQ352042: Pinctada margaritifera calconectin mRNA 1E-177
  PM039: GH279999 EF183520: Pinctada margaritifera linkine mRNA 1E-154
  PM072: GH280032 AB032612: Pinctada maxima mRNA for N14 matrix protein 1E-137
  PM070: GH280030 D86074: Pinctada fucata mRNA for MSI60 protein 4E-55
Cluster A PM076: GH280036 Q3YL58: Pinctada fucata mantle gene 8 5E-34
  PM061: GH280021 Q642M8: Danio rerio dehydrogenease/reductase 3E-32
  PM074: GH280034 Q86GA3: Crassostrea gigas paramyosin protein (fragment). 3E-28
  PM075: GH280035 ABF48089: Pinctada fucata EF-hand calcium-binding protein 1E-23
  PM053: GH280013 Q6TL28: Chlamys farreri. beta tubulin (fragment) 3E-21
  PM058: GH280018 Q3YL58: Pinctada fucata mantle gene 8 2E-18
  PM077: GH280037 Q16UT3: Aedes aegypti papilin protein 2E-16
  PM044: GH280004 EDP33798: Brugia malayi pancreatic trypsin inhibitor protein 8E-14
  PM306: GH738500 AF547223: Pinctada fucata ferritin-like protein mRNA 0
  PM124: GH280084 AF547223: Pinctada fucata ferritin-like protein mRNA 1E-152
  PM134: GH280094 AF526224: Argopecten irradians ribosomal protein S15 1E-38
  PM113: GH280073 Q27123: Urechis caupo cytochrome c oxidase subunit iv 1E-31
  PM120: GH280080 AF379610: Biomphalaria glabrata ezrin/radixin/moesin mRNA 2E-31
  PM119: GH280079 AJ561118: Crassostrea gigas ribosomal protein S25 3E-26
Cluster B PM114: GH280074 AB076927: Geloina erosa cytochrome c oxidase subunit I 7E-25
  PM105: GH280065 ABW90366: Sipunculus nudus ribosomal protein L35 1E-20
  PM087: GH280047 AJ563462: Crassostrea gigas ribosomal protein L9 5E-20
  PM137: GH280097 AJ563466: Crassostrea gigas ribosomal protein L31 2E-18
  PM313: GH738507 A6N9W3: Ornithodoros parkeri ribosomal protein S29 2E-15
  PM102: GH280062 Q8M0B7: Amoebidium parasiticum cytochrome c oxidase subunit 2 2E-09
  PM092: GH280052 AJ243849: Sus scrofa mRNA for glutathione peroxidase 3E-09
  PM307: GH738501 DQ018828: Argiope versicolor cytochrome oxidase subunit II 0.0006
  PM104: GH280064 Q7YW83: Pinctada fucata ferritin-like protein 0.002
  PM225: GH280185 Q287T6: Pinctada fucata tyrosinase 1E-133
  PM233: GH280193 ABO87298: Pinctada margaritifera KRMP-5 2E-15
  PM234: GH280194 Q1AGV8: Pinctada fucata KRMP-3 protein 3E-15
Cluster D PM236: GH280196 Q1AGV8: Pinctada fucata KRMP-3 protein 8E-14
  PM238: GH280198 Q6T6C2: Theromyzon tessulatum theromacin 1E-13
  PM235: GH280195 ABP57445: Pinctada margaritifera KRMP-7 1E-12
  PM244: GH280204 Q1AGV9: Pinctada fucata KRMP-2 protein 2E-10
  PM239: GH280199 Q1AGW0: Pinctada fucata KRMP-1 protein 0.0004
  PM226: GH280186 ABP57445: Pinctada margaritifera KRMP-7 0.044
  PM270: GH280230 AB429367: Pinctada maxima shematrin-3 mRNA 0
  PM274: GH280234 AB429365: Pinctada maxima shematrin-1 mRNA 1E-127
  PM264: GH280224 EF160119: Pinctada margaritifera shematrin-8 mRNA 1E-112
  PM262: GH280222 AB429365: Pinctada maxima shematrin-1 mRNA 1E-103
  PM255: GH280215 AB429365: Pinctada maxima shematrin-1 mRNA 5E-90
  PM276: GH280236 EF183519: Pinctada margaritifera KRMP-6 mRNA 1E-84
  PM277: GH280237 EF183519: Pinctada margaritifera KRMP-6 mRNA 2E-84
  PM273: GH280233 AB429365: Pinctada maxima shematrin-1 mRNA 8E-84
  PM275: GH280235 EF183519: Pinctada margaritifera KRMP-6 mRNA 5E-82
  PM281: GH280241 EF183519: Pinctada margaritifera KRMP-6 mRNA 2E-75
Cluster E PM260: GH280220 EF192240: Pinctada margaritifera KRMP-7 mRNA 6E-75
  PM268: GH280228 EF183519: Pinctada margaritifera KRMP-6 mRNA 9E-73
  PM280: GH280240 EF183519: Pinctada margaritifera KRMP-6 mRNA 1E-69
  PM258: GH280218 EF183519: Pinctada margaritifera KRMP-6 mRNA 1E-69
  PM279: GH280239 EF183519: Pinctada margaritifera KRMP-6 mRNA 2E-69
  PM278: GH280238 EF183519: Pinctada margaritifera KRMP-6 mRNA 3E-67
  PM245: GH280205 AB429365: Pinctada maxima shematrin-1 mRNA 4E-63
  PM247: GH280207 AM408910: Prunus necrotic ringspot virus coat protein 1E-60
  PM269: GH280229 Q45TK0: Pinctada fucata mantle protein 10 4E-53
  PM248: GH280208 AB429365: Pinctada maxima shematrin-1 mRNA 6E-41
  PM246: GH280206 EF160120: Pinctada margaritifera shematrin-9 mRNA 2E-35
  PM266: GH280226 ABP57445: Pinctada margaritifera KRMP-7 protein 6E-17
  PM261: GH280221 ABO87299: Pinctada margaritifera KRMP-6 protein 2E-14
  PM272: GH280232 Q1MW94: Pinctada fucata shematrin-3 protein 4E-13
  PM254: GH280214 AB429365: Pinctada maxima shematrin-1 mRNA 6E-12
  PM265: GH280225 Q27212: Pseudomicrothorax dubius articulin protein 0.001
  1. A list of P. maxima mantle ESTs with significant sequence similarity to annotated genes and proteins. These ESTs are significantly differentially expressed (P < 0.001) among specific regions of the mantle and have been clustered according to similar expression profiles: cluster A, B, D and E. Description of best sequence hit = highest sequence comparison match of ESTs with Blastx or Blastn search tools, including accession number and brief identification of matching sequence. E-valve = likelihood of random occurrence of sequence match, values approaching zero indicate increasing sequence match significance.