Skip to main content

Table 1 Oligopeptide transporter genes identified in Populus

From: Analyses of the oligopeptide transporter gene family in poplar and grape

Gene name Gene ID Genomic position Protein Length pI GRAVY* No. of TMHs** PSORT predictions***
PtOPT1 7458477 LG_VI:414929..418505(-) 744 9.14 0.382 16 P: 13
PtOPT2 7476446 LG_V:6874384..6878065(+) 747 8.45 0.43 12 P: 11, N: 1, C: 1
PtOPT3 7461839 LG_II:7990890..7994069(+) 724 9.07 0.496 12 P: 8, V: 3, E.R.: 2
PtOPT4 7469682 LG_IV:5289927..5295373(+) 752 9 0.459 16 P: 14
PtOPT5 7474080 LG_XVI:102654..100307(-) 661 9.44 0.381 14 P: 9, E.R.: 3, Ch: 2
PtOPT6 7485123 LG_I:30102965..30106100(+) 756 8.92 0.396 16 P: 12, V: 1
PtOPT7 7485120 LG_I:36933302..36936452(+) 724 9.31 0.406 14 P: 9, V: 3, E.R.: 2
PtOPT8 7472512 LG_XVI:5869..8859(+) 748 9.07 0.411 12 P: 10, E.R.: 4
PtOPT9 7496418 LG_XII:2251759..2269550(+) 723 8.93 0.391 14 P: 9, V: 2, E.R.: 2
PtOPT10 7456066 LG_III:8705285..8709320(+) 750 8.06 0.411 14 P: 8, G: 3, E.R.: 2
PtOPT11 7465336 LG_III:13357805..13361193(+) 760 5.57 0.392 14 P: 9, C: 3, M: 1
PtYSL1 7467032 LG_I:5980774..5978118(-) 662 9.13 0.596 14 P: 8, G: 3, V: 2
PtYSL2 7477824 LG_I:5980705..6181638(-) 652 9.23 0.526 14 P: 10, E.R.: 2, V: 1
PtYSL3 7464319 LG_XII:2602881..2601171(-) 625 9.29 0.615 11 P: 6, Ch: 4, E.R.: 3
PtYSL4 7492083 LG_V:2731980..2734897(+) 665 9.16 0.524 15 V: 8, P: 3, G: 2
PtYSL5 7494364 LG_IV:2622178..2624820(-) 687 8.86 0.426 12 P: 10, G: 2, V: 1
PtYSL6 7495797 LG_I:24263574..24268468(+) 669 5.54 0.628 13 P: 8, V: 4, G: 2
PtYSL7 7470849 scaffold_184:5062..8519(+) 668 9.13 0.496 12 P: 7, V: 4, G: 3
PtYSL8 7470829 scaffold_184:6206..5052(-) 372 9.09 0.565 8 G:5, P:4.5, G:4.5, Ch:2, N:1, V:1
PtYSL9 7483743 scaffold_5835:114..2350(+) 582 8.89 0.497 9 P: 8, V: 3, G: 2
  1. *GRAVY means Grand average of hydropathicity.
  2. ** Number of transmembrane helices predicted with TMHMM Server.
  3. *** PSORT predictions: P (plasma membrane), V (vacuolar membrane), C (cytosol), Ch (chloroplast), N (nuclear), E.R. (endoplasmic reticulum), M (mitochondrion) and G (Golgi apparatus).