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Table 1 Functional annotation of unigenes preferentially transcribed in juvenile wood with contrasting stiffness and microfibril angle a

From: Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

 

Unigenes

Blast matches b

GO terms assigned c

  

UniProt

UniProt&RefSeq

Total

CC

MF

BP

HS

(LM)

307

196

(63.8%)

200

(65.1%)

182

(59.3%)

111

(61.0%)

156

(85.7%)

149

(81.9%)

LS

(HM)

446

284

(63.7%)

286

(64.1%)

232

(52.0%)

149

(64.1%)

215

(92.7%)

188

(81.0%)

  1. aJuvenile wood included two types: wood with high stiffness (HS) and low microfibril angle (LM), and wood with low stiffness (LS) and high microfibril angle (HM). bRefer to the matches in the UniProt known protein and RefSeq databases (tblastx, E-value < 1e-5). cCC- cellular component; MF- molecular function; BP- biological process. Percentage (%) of CC, MF and BP were calculated using the total unigenes assigned with GO terms.
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BMC Genomics

ISSN: 1471-2164

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