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Table 4 Putative candidate genes with known functions preferentially transcribed in juvenile wood with low stiffness and high microfibril angle

From: Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

Candidate genes GenBank Accession a Flynn-EW b Flynn-LW b Kromelite- LW b Mean ratio Mean P-value
10 kDa chaperonin protein GO269358 1.50 (0.054)   1.33 (0.045) 1.42 0.050
ALG2-interacting protein FE519827   1.42 (0.021) 1.33 (0.049) 1.38 0.035
Annexin 1c FE519074   1.40 (0.053) 1.37 (0.048) 1.39 0.051
Brix domain FE522600 1.46 (0.051)   1.39 (0.044) 1.43 0.048
C13 endopeptidase NP1 FE520715   1.37 (0.038) 1.37 (0.045) 1.37 0.042
CC-NBS-LRR resistance-like FE520054   1.33 (0.051) 1.35 (0.048) 1.34 0.050
Cellulase FE520483   1.36 (0.004) 1.34 (0.054) 1.35 0.029
Cyclin-like F-box FE520391   1.45 (0.021) 1.28 (0.052) 1.37 0.037
Disease resistance gene FE523993 1.22 (0.052)   1.25 (0.046) 1.24 0.049
DnaJ FE520065   1.62 (0.023) 1.58 (0.045) 1.60 0.034
Down-regulated in metastasis FE519946   1.42 (0.004) 1.37 (0.010) 1.39 0.007
Early-responsive to dehydration stress FE520632 1.54 (0.011)   1.37 (0.050) 1.45 0.031
eIF3 subunit 5 FE519503   1.36 (0.054) 1.34 (0.039) 1.35 0.047
Embryo abundance protein FE518938   1.41 (0.043) 1.40 (0.031) 1.40 0.037
Ethylene-forming enzyme FE519909   1.44 (0.020) 1.45 (0.022) 1.44 0.021
FadR FE521144   1.50 (0.045) 1.62 (0.051) 1.56 0.048
Ferredoxin FE519674   1.39 (0.054) 1.31 (0.002) 1.35 0.028
FtsK FE520914   1.39 (0.006) 1.38 (0.039) 1.38 0.023
Iodothyronine deiodinase 2 FE519928   1.30 (0.054) 1.21 (0.051) 1.26 0.050
Kinase-like protein FE521010   1.45 (0.050) 1.47 (0.054) 1.46 0.052
LEA FE519754   1.37 (0.021) 1.44 (0.046) 1.40 0.034
Methylenetetrahydrofolate reductase 1 FE519965   1.61 (0.051) 1.40 (0.045) 1.51 0.043
Mitochondrial import receptor FE519985   1.23 (0.045) 1.45 (0.052) 1.34 0.049
Multidomain cyclophilin PPlases FE520902   1.34 (0.026) 1.31 (0.002) 1.33 0.014
Pectate lyase FE520053   1.25 (0.035) 1.23 (0.052) 1.24 0.044
Peroxidase FE522191 1.25 (0.012)   1.21 (0.036) 1.23 0.024
Protein translation factor FE519467   1.28 (0.054) 1.24 (0.029) 1.26 0.042
Pseudotzain FE520007   1.33 (0.040) 1.41 (0.052) 1.37 0.046
Receptor-like protein kinase FE520561   1.22 (0.028) 1.28 (0.002) 1.25 0.015
Sb50 fragment FE520247 1.25 (0.011)   1.30 (0.053) 1.28 0.032
SINA fragment FE520708   1.33 (0.041) 1.43 (0.050) 1.38 0.046
Subtilisin-like protease FE520006   1.27 (0.052) 1.33 (0.049) 1.30 0.051
TCTP FE518564   1.21 (0.045) 1.33 (0.034) 1.27 0.045
Translation factor SUI1 FE519740   1.42 (0.049) 1.38 (0.029) 1.40 0.039
  1. aGenbank accession number for the representing EST of each gene.bThree microarray experiments: Flynn-EW (earlywood in Flynn, spring), Flynn-LW (latewood in Flynn, autumn) and Kromelite-LW (latewood in Kromelite, summer). Gene expression ratios with (P-values) are presented.