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Table 4 Putative candidate genes with known functions preferentially transcribed in juvenile wood with low stiffness and high microfibril angle

From: Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

Candidate genes

GenBank Accession a

Flynn-EW b

Flynn-LW b

Kromelite- LW b

Mean ratio

Mean P-value

10 kDa chaperonin protein

GO269358

1.50 (0.054)

 

1.33 (0.045)

1.42

0.050

ALG2-interacting protein

FE519827

 

1.42 (0.021)

1.33 (0.049)

1.38

0.035

Annexin 1c

FE519074

 

1.40 (0.053)

1.37 (0.048)

1.39

0.051

Brix domain

FE522600

1.46 (0.051)

 

1.39 (0.044)

1.43

0.048

C13 endopeptidase NP1

FE520715

 

1.37 (0.038)

1.37 (0.045)

1.37

0.042

CC-NBS-LRR resistance-like

FE520054

 

1.33 (0.051)

1.35 (0.048)

1.34

0.050

Cellulase

FE520483

 

1.36 (0.004)

1.34 (0.054)

1.35

0.029

Cyclin-like F-box

FE520391

 

1.45 (0.021)

1.28 (0.052)

1.37

0.037

Disease resistance gene

FE523993

1.22 (0.052)

 

1.25 (0.046)

1.24

0.049

DnaJ

FE520065

 

1.62 (0.023)

1.58 (0.045)

1.60

0.034

Down-regulated in metastasis

FE519946

 

1.42 (0.004)

1.37 (0.010)

1.39

0.007

Early-responsive to dehydration stress

FE520632

1.54 (0.011)

 

1.37 (0.050)

1.45

0.031

eIF3 subunit 5

FE519503

 

1.36 (0.054)

1.34 (0.039)

1.35

0.047

Embryo abundance protein

FE518938

 

1.41 (0.043)

1.40 (0.031)

1.40

0.037

Ethylene-forming enzyme

FE519909

 

1.44 (0.020)

1.45 (0.022)

1.44

0.021

FadR

FE521144

 

1.50 (0.045)

1.62 (0.051)

1.56

0.048

Ferredoxin

FE519674

 

1.39 (0.054)

1.31 (0.002)

1.35

0.028

FtsK

FE520914

 

1.39 (0.006)

1.38 (0.039)

1.38

0.023

Iodothyronine deiodinase 2

FE519928

 

1.30 (0.054)

1.21 (0.051)

1.26

0.050

Kinase-like protein

FE521010

 

1.45 (0.050)

1.47 (0.054)

1.46

0.052

LEA

FE519754

 

1.37 (0.021)

1.44 (0.046)

1.40

0.034

Methylenetetrahydrofolate reductase 1

FE519965

 

1.61 (0.051)

1.40 (0.045)

1.51

0.043

Mitochondrial import receptor

FE519985

 

1.23 (0.045)

1.45 (0.052)

1.34

0.049

Multidomain cyclophilin PPlases

FE520902

 

1.34 (0.026)

1.31 (0.002)

1.33

0.014

Pectate lyase

FE520053

 

1.25 (0.035)

1.23 (0.052)

1.24

0.044

Peroxidase

FE522191

1.25 (0.012)

 

1.21 (0.036)

1.23

0.024

Protein translation factor

FE519467

 

1.28 (0.054)

1.24 (0.029)

1.26

0.042

Pseudotzain

FE520007

 

1.33 (0.040)

1.41 (0.052)

1.37

0.046

Receptor-like protein kinase

FE520561

 

1.22 (0.028)

1.28 (0.002)

1.25

0.015

Sb50 fragment

FE520247

1.25 (0.011)

 

1.30 (0.053)

1.28

0.032

SINA fragment

FE520708

 

1.33 (0.041)

1.43 (0.050)

1.38

0.046

Subtilisin-like protease

FE520006

 

1.27 (0.052)

1.33 (0.049)

1.30

0.051

TCTP

FE518564

 

1.21 (0.045)

1.33 (0.034)

1.27

0.045

Translation factor SUI1

FE519740

 

1.42 (0.049)

1.38 (0.029)

1.40

0.039

  1. aGenbank accession number for the representing EST of each gene.bThree microarray experiments: Flynn-EW (earlywood in Flynn, spring), Flynn-LW (latewood in Flynn, autumn) and Kromelite-LW (latewood in Kromelite, summer). Gene expression ratios with (P-values) are presented.
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BMC Genomics

ISSN: 1471-2164

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