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Table 4 "Top 20 known genes" up-regulated in the group without scales (WS) in relation to the control (N) on day 3.

From: Skin healing and scale regeneration in fed and unfed sea bream, Sparus auratus

Clone LogFold adj P-val Acc. Number Gene Identification Putative function
SAPD03340 2.794 0.021 Q6P0E4 Type I cytokeratin, enveloping layer Structural protein.
SAPD14269 2.453 0.001 Q9BUX1 Cation transport regulator-like protein 1 Potential component of the unfolded protein response.
SAPD07472 2.389 0.022 Q5QGT7 Receptor-transporting protein 2 Promotes functional cell surface expression of olfactory receptors, but also shown to be induced by interferon in response to infection.
SAPD04707 2.227 0.004 Q5QGT7 Receptor-transporting protein 2 Promotes functional cell surface expression of olfactory receptors, but also shown to be induced by interferon in response to infection.
SAPD01524 2.217 0.021 Q9BUX1 Cation transport regulator-like protein 1 Potential component of the unfolded protein response.
SAPD25017 2.008 0.000 NP_999926 Hypothetical protein LOC406638 GTP binding, immune function, specifically related to bacteria.
SAPD05261 1.934 0.016 Q7T2R0 IFI56 Immune function: antiviral effect.
SAPD23209 1.796 0.003 O43175 D-3-phosphoglycerate dehydrogenase Amino acid biosynthesis, cell growth and differentiation, metabolic development and CNS function.
SAPD24645 1.771 0.006 P00480 OTCase Ornithine transcarbamylase Amino acid biosynthesis.
SAPD22329 1.756 0.003 Q8TAV3 Cytochrome P450 2W1 EC 1.14.14.- CYPIIW1 Oxidative degradation and detoxification.
SAPD12115 1.752 0.024 Q08380 Galectin-3-binding protein precursor Cell attachment and adhesion. May play a role in host defenses.
SAPD22251 1.735 0.006 Q6PGQ7 Protein aurora borealis (HsBora) Cell division and mitosis.
SAPD15427 1.712 0.015 NP_932346 Methionine sulfoxide reductase B3 isoform 1 Antioxidant repair.
SAPD22138 1.582 0.004 Q16667 Cyclin-dependent kinase inhibitor 3 Haematopoietic ell cycle regulation.
SAPD25026 1.531 0.014 NP_001003640 Hypothetical protein LOC445246 RNA binding. Plectrin domain present in some forms of cytoskeletal muscle and ribosomal S10 protein (translation).
SAPD19262 1.418 0.008 Q13309 S-phase kinase-associated protein 2 Cell cycle progression/cell growth and apoptosis. Ubiquitination and degradation of proteins.
SAPD19571 1.394 0.015 O60566 Mitotic checkpoint serine/threonine-protein kinase BUB1 beta Mitotic checkpoint protein.
SAPD17118 1.393 0.041 Q9UBR1 Beta-ureidopropionase (BUP-1) Amino acid biosynthesis.
SAPD13849 1.390 0.021 Q9H7X7 Rab-like protein 5 Regulator of haematopoietic cells with roles in cell growth, survival, differentiation, cytokine production, chemotaxis, vesicle trafficking and phagocytosis.
SAPD21101 1.355 0.015 P06493 Cyclin-dependent kinase 1 (CDK1) Key role in the cell cycle. Required for entry into S phase and mitosis.
  1. The "Top 20 known genes" were taken from 36 transcripts of which 16 showed no match to genes of known function. Putative function was assigned via BLAST sequence similarity searching. All matches are in excess of 1.0 e-10. Definitions: LogFold = Estimate of the log2-fold change corresponding to the effect; adj p val = adjusted as described in methods.