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Table 4 "Top 20 known genes" up-regulated in the group without scales (WS) in relation to the control (N) on day 3.

From: Skin healing and scale regeneration in fed and unfed sea bream, Sparus auratus

Clone

LogFold

adj P-val

Acc. Number

Gene Identification

Putative function

SAPD03340

2.794

0.021

Q6P0E4

Type I cytokeratin, enveloping layer

Structural protein.

SAPD14269

2.453

0.001

Q9BUX1

Cation transport regulator-like protein 1

Potential component of the unfolded protein response.

SAPD07472

2.389

0.022

Q5QGT7

Receptor-transporting protein 2

Promotes functional cell surface expression of olfactory receptors, but also shown to be induced by interferon in response to infection.

SAPD04707

2.227

0.004

Q5QGT7

Receptor-transporting protein 2

Promotes functional cell surface expression of olfactory receptors, but also shown to be induced by interferon in response to infection.

SAPD01524

2.217

0.021

Q9BUX1

Cation transport regulator-like protein 1

Potential component of the unfolded protein response.

SAPD25017

2.008

0.000

NP_999926

Hypothetical protein LOC406638

GTP binding, immune function, specifically related to bacteria.

SAPD05261

1.934

0.016

Q7T2R0

IFI56

Immune function: antiviral effect.

SAPD23209

1.796

0.003

O43175

D-3-phosphoglycerate dehydrogenase

Amino acid biosynthesis, cell growth and differentiation, metabolic development and CNS function.

SAPD24645

1.771

0.006

P00480

OTCase Ornithine transcarbamylase

Amino acid biosynthesis.

SAPD22329

1.756

0.003

Q8TAV3

Cytochrome P450 2W1 EC 1.14.14.- CYPIIW1

Oxidative degradation and detoxification.

SAPD12115

1.752

0.024

Q08380

Galectin-3-binding protein precursor

Cell attachment and adhesion. May play a role in host defenses.

SAPD22251

1.735

0.006

Q6PGQ7

Protein aurora borealis (HsBora)

Cell division and mitosis.

SAPD15427

1.712

0.015

NP_932346

Methionine sulfoxide reductase B3 isoform 1

Antioxidant repair.

SAPD22138

1.582

0.004

Q16667

Cyclin-dependent kinase inhibitor 3

Haematopoietic ell cycle regulation.

SAPD25026

1.531

0.014

NP_001003640

Hypothetical protein LOC445246

RNA binding. Plectrin domain present in some forms of cytoskeletal muscle and ribosomal S10 protein (translation).

SAPD19262

1.418

0.008

Q13309

S-phase kinase-associated protein 2

Cell cycle progression/cell growth and apoptosis. Ubiquitination and degradation of proteins.

SAPD19571

1.394

0.015

O60566

Mitotic checkpoint serine/threonine-protein kinase BUB1 beta

Mitotic checkpoint protein.

SAPD17118

1.393

0.041

Q9UBR1

Beta-ureidopropionase (BUP-1)

Amino acid biosynthesis.

SAPD13849

1.390

0.021

Q9H7X7

Rab-like protein 5

Regulator of haematopoietic cells with roles in cell growth, survival, differentiation, cytokine production, chemotaxis, vesicle trafficking and phagocytosis.

SAPD21101

1.355

0.015

P06493

Cyclin-dependent kinase 1 (CDK1)

Key role in the cell cycle. Required for entry into S phase and mitosis.

  1. The "Top 20 known genes" were taken from 36 transcripts of which 16 showed no match to genes of known function. Putative function was assigned via BLAST sequence similarity searching. All matches are in excess of 1.0 e-10. Definitions: LogFold = Estimate of the log2-fold change corresponding to the effect; adj p val = adjusted as described in methods.