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Table 8 Known Genes up-regulated in the 7 day sampling.

From: Skin healing and scale regeneration in fed and unfed sea bream, Sparus auratus

Clone LogFold adj P-val Acc. Number Gene Identification Putative function
Group without scales (WS) in relation to the control (N)
SAPD11984 5.158 0.002 Q6E5T5 Claudin 1 Calcium-independent cell-adhesion activity.
SAPD02183 3.186 0.015 IPI00028413 Inter-alpha globulin Inhibitor H3 Hyaluronan metabolic processes.
SAPD18084 2.505 0.012 NP_001012506 Hypothetical protein LOC503524 Oxidoreductase. Potential role in ketone utilisation as a secondary energy source or generate precursors for lipid and sterol synthesis.
SAPD01661 2.356 0.019 Q5PSM1 Betaine homocysteine methyltransferase Involved in methionine and betaine production (membrane composition, osmolyte concentrations and protein unfolding).
SAPD00429 1.129 0.013 Q14691 DNA replication complex GINS protein PSF1 Essential role in DNA replication.
SAPD11480 1.049 0.032 NP_001011729 Transforming acidic coiled coil 3 Involved in centrosome/mitotic spindle dynamics, gene regulation.
Group starved (ST) in relation to the control (N)
SAPD06461 3.250 0.003 Q9BY76 Angiopoietin-related protein 4 precursor Inhibition of proliferation, migration and tubule formation of endothelial cells. May exert a protective action on endothelial cells via endocrine action.
SAPD25996 2.942 0.011 Q9BY76 Angiopoietin-related protein 4 precursor Inhibition of proliferation, migration and tubule formation of endothelial cells. May exert a protective action on endothelial cells via endocrine action.
SAPD10144 1.903 0.023 Q15119 Pyruvate dehydrogenase kinase isoform 2 Regulation of glucose metabolism.
SAPD22443 1.672 0.008 Q96DE5 Uncharacterized protein C10orf104 Cell cycle control.
SAPD13172 1.576 0.014 NP_001018326 villin 2 ezrin like Involved the cytoskeleton, may influence rho signalling pathways.
Group starved and without scales (7STWS) in relation to the control (7N)
SAPD06461 2.772 0.011 Q9BY76 Angiopoietin-related protein 4 precursor Inhibition of proliferation, migration and tubule formation of endothelial cells. May exert a protective action on endothelial cells via endocrine action.
SAPD13675 2.203 0.029 P40313 Chymotrypsin-like protease CTRL-1 precursor Protein degradation, degradation of old proteins for nutrition, control of protein activity, defense activity.
SAPD18879 1.437 0.007 P50570 Dynamin-2 Involved in the cytoskeleton and muscle structure.
SAPD00429 1.411 0.002 Q14691 DNA replication complex GINS protein PSF1 Essential role in DNA replication.
Group starved and without scales (7STWS) in relation to starved group (7ST)
SAPD03340 3.815 0.002 Q6P0E4 Type I cytokeratin, enveloping layer Structural protein.
SAPD01645 3.471 0.028 Q99895 Caldecrin precursor (Chymotrypsin C) Protease activity and hypocalcaemic activity: decreases serum calcium.
SAPD03019 1.759 0.044 P35222 Catenin beta-1 Beta-catenin Regulation of cell adhesion. Transcriptional co-activator via the Wnt pathway (development, cell proliferation and differentiation).
SAPD00618 1.469 0.007 NP_998168 Hypothetical protein LOC406276 Important role in the modification and proliferation of neurons.
SAPD00429 1.199 0.009 Q14691 DNA replication complex GINS protein PSF1 Essential role in DNA replication.
SAPD21979 1.121 0.037 P50454 Serpin H1 precursor Essential in collagen synthesis.
  1. The genes from the comparisons WS v. N, ST v. N, STWS v. N and STWS v. ST were taken from 8, 14, 17 and 10 transcripts of which 2, 9, 13 and 4, respectively, showed no match to genes of known function. Putative functionality was assigned via BLAST sequence similarity searching. All matches are in excess of 1.0e-10. Table definitions are the same as for Table 4.