Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression

BMC Genomics

Table 1 RNA-seq mapping result using TopHat.

	hESC¹ human embryonic stem cell	hN1¹ early hESC initiation	hN2¹ human neural progenitor	hN3¹ human early glial-like	E18 mouse brain cortex at E18	P7 mouse brain cortex at P7	Adult brain² mouse	Adult liver² mouse	Adult muscle² mouse
Sequencing Platform	Illumina
Accession Number	SRR037165 to SRR037170	SRR037193 to SRR037198	SRR037199 to SRR037205	SRR037220 to SRR037226	SRP007262	SRP007262	SRR001356 SRR001357 SRR006488 and SRR006489	SRR001358 SRR001359 SRR006490 and SRR006491	SRR001361 SRR001362 and SRR006492
Read Type	35 bp PE and 35 bp SE				36 bp PE and 36 bp SE		33 bp SE
Original Read Count	14.4 M PE and 4.4 M SE	15.8 M PE and 7.0 M SE	19.6 M PE and 11.6 M SE	22.4 M PE and 3.0 M PE	10.0 M PE and 3.0 M SE	10.4 M PE and 3.6 M SE	89.0 M SE	75.9 M SE	59.9 M SE
Original RNA-seq data size (Mbp)	1,162	1,352	1,774	1,819	853	857	2,936	2,503	1,977
Mapped by Tophat* (Mbp)	401	458	628	594	491	525	1,086	683	571
Percentage Mapped (%)	35	34	35	33	58	61	37	27	29

ISSN: 1471-2164