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Table 1 RNA-seq mapping result using TopHat.

From: Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression

  hESC1
human embryonic stem cell
hN11
early hESC initiation
hN21
human neural progenitor
hN31
human early glial-like
E18
mouse brain cortex at E18
P7
mouse brain cortex at P7
Adult brain2
mouse
Adult liver2
mouse
Adult muscle2
mouse
Sequencing Platform Illumina
Accession Number SRR037165 to SRR037170 SRR037193 to SRR037198 SRR037199 to SRR037205 SRR037220 to SRR037226 SRP007262 SRP007262 SRR001356 SRR001357 SRR006488 and SRR006489 SRR001358 SRR001359 SRR006490 and SRR006491 SRR001361 SRR001362 and SRR006492
Read Type 35 bp PE and 35 bp SE 36 bp PE and 36 bp SE 33 bp SE
Original Read Count 14.4 M PE and 4.4 M SE 15.8 M PE and 7.0 M SE 19.6 M PE and 11.6 M SE 22.4 M PE and 3.0 M PE 10.0 M PE and 3.0 M SE 10.4 M PE and 3.6 M SE 89.0 M SE 75.9 M SE 59.9 M SE
Original RNA-seq data size (Mbp) 1,162 1,352 1,774 1,819 853 857 2,936 2,503 1,977
Mapped by Tophat* (Mbp) 401 458 628 594 491 525 1,086 683 571
Percentage Mapped (%) 35 34 35 33 58 61 37 27 29
  1. * Allowing 1 hit by TopHat
  2. 1. Data from Wu et al. [7].
  3. 2. Data from Mortazavi et al. [18].