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Figure 4 | BMC Genomics

Figure 4

From: Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

Figure 4

Multalin alignment of the N-termini of 13 P.halstedii (PhCRN) and 8 H.arabidopsidis (HaCRN) CRN putative effectors. PhCRN proteins were predicted by FrameDP [46] and for the alignment, first methionine was considered as the start of the protein. PhCRN_13 and_15, too short, were excluded. The predicted proteins for PhCRN_10 to_14 were added even their FrameDP predicted peptides were shorter than 130 amino acids. The last lane consensus indicates the highly conserved amino acids in red (> 90% identity) and in blue, amino acids conserved in more than 50% of the aligned sequences.

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