Table 5 Transcription factor targets of conserved miRNA families in Boechera species.
From: Analysis of conserved microRNAs in floral tissues of sexual and apomictic Boechera species
miRNA family | Target protein | Function of target | Target gene (UPE) | E-value |
|---|---|---|---|---|
miR156/157 | Squamosa promoter binding protein like | Â | Â | Â |
| Â | SPL11 | Transcription factor | AT1G27360 (11.430) | 1 |
| Â | SPL 2 | Â | AT5G43270 (11.987) | 1 |
| Â | SPL10 | Â | AT1G27370 (12.296) | 1 |
| Â | SPL15 | Â | AT3G57920 (14.449) | 1 |
| Â | SPL 9 | Â | AT2G42200 (16.239) | 1 |
| Â | SPL6 | Â | AT1G69170 (17.076) | 1 |
miR159 | Myb domain protein 120 (MYB120); DNA binding | Transcription factor | AT5G55020 (7.049) | 3.5 |
miR160 | Auxin Response Factor 10 (ARF10); transcription factor | Transcription factor | AT2G28350 (18.139) | 1 |
miR167 | Auxin response factor 8 (ARF8) | Transcription factor | AT5G37020 (17.281) | 3.5 |
miR169 | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | Transcription factor | ATIG17590 (18.910) | 2 |
MiR170/171 | Scarecrow transcription factor family protein | Transcription factor | AT3G60630 (14.202) | 1 |
miR172 | RAP2.7, TOE1 | RAP2.7 (RELATED TO AP2.7) DNA binding | Transcription factor | AT2G28550 (16.639) | 1.5 |
miR319 | TCP10 (TCP Domain Protein 10) | Transcription factor | AT2G31070 (10.122) | 3.5 |
| Â | TCP4 (TCP family transcription factor 4) | Transcription factor | AT3G15030 (13.479) | 3.5 |
miR396 | AtGRF4 (Growth regulating factor 4) | Transcription activator | AT3G52910 (14.357) | 2 |
miR408 | TIL1 (TILTED 1); DNA binding/DNA-directed DNA polymerase/nucleic acid binding/nucleotide binding/zinc ion binding | Transcription factor | AT1G08260 (15.881) | 4 |
miR414 | WRKY DNA -binding domain | Transcription factor | AT4G31550 | Â |