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Table 2 Protein and 5' UTR in silico predictions

From: Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

  Unique AAa Protein domains Signal peptide Glucosylation and phosphorylation 5'UTR
Gene Long Short Long Short Long Short Long Short Long Short
TCF12 193 23    Yes Yes 10 glyco, 27 phos    
OSBPL1A 513   3 Ankb,Pleckc   No No 31 phos    
TRAK1 96 38    Yes No     
CHEK1 0     No No    uORFd  
ANK3 872 6 20 Ankb   No No 3 glyco, 33 phos    
UGP2 11     No No     uORFd
LMO7 285   Calponin   Yes No 21 phos   IRESe  
ACSL5 56     No Yes     
SCIN 247   2 Gelsolin   No No     uORFd
  1. aAA = Amino acids
  2. bAnk = Ankyrin repeats
  3. cPleck = Pleckstrin
  4. duORF = Upstream open reading frame
  5. eIRES = Internal ribosome entry site