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Table 2 Protein and 5' UTR in silico predictions

From: Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

 

Unique AAa

Protein domains

Signal peptide

Glucosylation and phosphorylation

5'UTR

Gene

Long

Short

Long

Short

Long

Short

Long

Short

Long

Short

TCF12

193

23

  

Yes

Yes

10 glyco, 27 phos

   

OSBPL1A

513

 

3 Ankb,Pleckc

 

No

No

31 phos

   

TRAK1

96

38

  

Yes

No

    

CHEK1

0

   

No

No

  

uORFd

 

ANK3

872

6

20 Ankb

 

No

No

3 glyco, 33 phos

   

UGP2

11

   

No

No

   

uORFd

LMO7

285

 

Calponin

 

Yes

No

21 phos

 

IRESe

 

ACSL5

56

   

No

Yes

    

SCIN

247

 

2 Gelsolin

 

No

No

   

uORFd

  1. aAA = Amino acids
  2. bAnk = Ankyrin repeats
  3. cPleck = Pleckstrin
  4. duORF = Upstream open reading frame
  5. eIRES = Internal ribosome entry site