Table 1 Summary of the RNA-Seq Data Combined from Three Independent Biological Experiments
| Â | NaOH-treated | ABA-treated | H2O-treated | PEG-treated | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Shoot | Root | Shoot | Root | Shoot | Root | Shoot | Root |
Total 50bp single end reads (M) | 87.9 | 90.2 | 80.5 | 84.2 | 88.7 | 88.8 | 87 | 82.2 |
Total reads passing Illumina's purity filtering (PF) (M) | 70.7 | 68 | 64.5 | 65.3 | 66.3 | 67.7 | 67.2 | 66.2 |
Total PF reads that were "repeat masked" (M) | 5.4 | 4.9 | 4.6 | 5.0 | 4.9 | 4.7 | 5.3 | 4.8 |
Total PF reads with no match to the Sb genome (M) | 4.4 | 4.4 | 2.3 | 3.5 | 6.3 | 6.6 | 1.2 | 2.4 |
Total reads uniquely mapped to the Sb genome (M) | 60.7 | 58.6 | 57.5 | 56.5 | 54.7 | 56.3 | 59.7 | 58.9 |
Total reads mapped to annotated genes (M) | 55.59 | 51.78 | 52.31 | 50.32 | 49.59 | 49.74 | 53.89 | 52.38 |