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Figure 1 | BMC Genomics

Figure 1

From: The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach

Figure 1

Plots to assess the effect of the parameter 'Max multihits' (X-axis). 'Max multihits' is a TopHat parameter that indicates how many times one tag is permitted to be aligned. (a) Number of genes found by RNAseq (Y-axis) against 'Max multihits'. (b) Spearman's correlation between microarrays (GSM23372, GSM161670, and GSM246123) and RNAseq. (c) Y-axis indicates how many splicing sites found in TopHat were included in known genes or FPKM > 0 genes. (d) Histogram showing the distribution of FPKM. As the number of permitted 'Max multihits' increased, the quantity of genes with small FPKM values increased (black arrows).

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BMC Genomics

ISSN: 1471-2164

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