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Figure 3 | BMC Genomics

Figure 3

From: The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach

Figure 3

Expressed genes were categorized by the phosphorylation state of RNAPII. (a) A Venn diagram summarizing the overlap between FPKM > 0 genes, Ser2P-RNAPII positive genes, and Ser5P-RNAPII positive genes. We defined the presence of RNAPII to be positive if the region of the peak found by Peakseq overlapped the gene body. (b) Tags found by ChIPseq and peaks found by Peakseq (P-value < 0.05, FDR < 0.05) were visualized on the UCSC Genome Browser. (c) The abundance of different phosphorylated forms of RNAPII at Ser2P and/or Ser5P positive genes assessed by ChIP and qPCR at the coding region near the TSS and TES.

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BMC Genomics

ISSN: 1471-2164

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