Skip to main content

Table 1 HSPs statistics concerning the Blast2seq application of the rCRS sequence (J01415)

From: The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser

  HSP similarities HSP lengths (% of mt genome) ΔHSP-span differences Distances between concatenated HSPs
min 63.52 31 (0.1) 0 -8
1st quartile 73.74 94 (0.5) 0 215.25
median 78.41 215 (1) 1 320
3rd quartile 84.62 619 (3) 5 585.75
max 100 14836 (89) 160 6129
  1. For each HSP, the ΔHSP-span difference is the absolute value of the difference between the HSP length on nuclear genome and the HSP length on the mitochondrial genome. The distance of -8 bp reported indicates overlapping of two concatenated HSPs on nuclear genome.