Table 1 Repeat types within L.angustifolius BAC-end sequences identified with Repeatmasker (http://repeatmasker.org) versus REPBASE [57]

Retroelements

2551

1007849

11.34

SINEs

9

761

0.01

LINEs

294

95086

1.07

RTE/Bov-B

67

13157

0.15

L1/CIN4

227

81929

0.92

LTR elements

2248

912002

10.26

Ty1/Copia

1296

545597

6.14

Gypsy/DIRS1

892

362514

4.08

DNA transposons

182

40690

0.46

Hobo-Activator

62

11795

0.13

Tc1-IS630-Pogo

1

117

0

En-Spm

48

14769

0.17

MuDR-IS905

17

1516

0.02

Tourist/Harbinger

35

6229

0.07

Unclassified

7

596

0.01

Total Interspersed Repeats

1049135

11.81

Ribosomal RNA

422

244400

2.75

Simple repeats

461

25165

0.28

Low complexity sequence

3391

161502

1.82