Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

BMC Genomics

Table 1 Summary of Illumina expressed short reads production and filtration

Catfish species	No. of tissues	No. of fish	Sequencer	Sequence length*	Reads (X10⁶)	Bases sequenced (X10⁹)	Reads after trimming (X10⁶)	Bases after trimming (X10⁹)
Channel	11	47	Illumina GA-II	36 bp	48.6	1.8	47.2	1.7
			HiSeq 2000	100 bp	173.9	17.4	171.6	13.9
Blue	11	19	Illumina GA-II	36 bp	66.9	2.3	62.1	2.2
			HiSeq 2000	100 bp	216.6	21.7	212.5	17.4
Total	-	-	-	-	506.0	43.2	493.4	35.2

Eleven tissues were used for RNA preparation including brain, gill, head kidney, intestine, liver, muscle, skin, spleen, stomach, heart, and trunk kidney. *Paired-end reads were generated in different lengths of either 36 bp or 100 bp as a result of different sequencers, Illumina GA-II or HiSeq 2000.

ISSN: 1471-2164