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Table 1 Summary of Illumina expressed short reads production and filtration

From: Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Catfish species No. of tissues No. of fish Sequencer Sequence length* Reads (X106) Bases sequenced (X109) Reads after trimming (X106) Bases after trimming (X109)
Channel 11 47 Illumina GA-II 36 bp 48.6 1.8 47.2 1.7
    HiSeq 2000 100 bp 173.9 17.4 171.6 13.9
Blue 11 19 Illumina GA-II 36 bp 66.9 2.3 62.1 2.2
    HiSeq 2000 100 bp 216.6 21.7 212.5 17.4
Total - - - - 506.0 43.2 493.4 35.2
  1. Eleven tissues were used for RNA preparation including brain, gill, head kidney, intestine, liver, muscle, skin, spleen, stomach, heart, and trunk kidney. *Paired-end reads were generated in different lengths of either 36 bp or 100 bp as a result of different sequencers, Illumina GA-II or HiSeq 2000.
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