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Table 5 Summary of BLASTX searches to annotated protein databases

From: Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Assembly Contigs hit Uniprot % contigs with hits Unique protein hits Contigs hit zebrafish Refseq % contigs with hits Unique zebrafish Refseq hits
Reference 32,350 30.9% 17,766 36,597 34.9% 14,874
De novo 24,168 5.7% 12,331 29,688 7.1% 10,781
Total 56,518 10.7% 24,440 66,285 12.6% 19,899
  1. Contigs of two assemblies, the reference assembly with 104,870 contigs and the de novo assembly with 421,229 contigs, were used to search the Uniprot database and the zebrafish Refseq protein database to assess the number of related genes represented by catfish expressed sequences.