Tandemly repeated DNA families in the mouse genome

BMC Genomics

Table 5 Multi locus family

N	Subfamily	Unit (bp)	Chromo Bands	Arrays	GC%	Length	Var%	ChrUn	HOR
1	TR-22A-MM	22	4A2, 6A2, 7A2,18B2	9	58.1	12896	26	3	+
2	TR-4A-MM	4	1H6, 9F1, 9F3, XA4, XC2, XF5, YA2	6	33.1	7704	30	3	+
3	TR-27A-MM	27	14B,17A2	4	39.6	7073	27	0	+
4	TR-31C-MM	31	9A2*	4	49.5	13059	24	0	+
5	TR-18A-MM	18	14A2, XF5	3	55.5	5644	27	1	+
6	TR-19B-MM	19	5G1.2,12D1	3	47.8	5852	19	0	+
7	TR-38C-MM	38	12B1,13A3.2	3	48.7	6797	26	0	+
8	TR-57A-MM	57	5C2,7F5, 8A1.2, 10D3, 12F1, 14B, 16C2, 17A2, XA6	3	52.3	5619	21	0	+
9	TR-4B-MM	4	1H6, XA4, XC2	2	46.2	4161	36	3	+
10	TR-6A-MM	6	5C2, XC2, XF3, XF5	2	60.2	6649	39	0	+
11	TR-16A-MM	16	6E2,8A1.2, 16C3.2	2	54.2	6765	17	0	+
12	TR-20A-MM	20	XA4, XF5	2	45.5	3604	31	0	+
13	TR-31A-MM	31	7D1,8C1	2	50.6	6558	20	3	+
14	TR-31B-MM	31	7D1,14A2	2	53.2	4922	19	1	+
15	TR-58A-MM	58	6B2.2,6C2, 6F3, 13B1	2	50.5	4658	34	0	+
16	TR-1521A-MM	1521	7F3, XA1.2	2	44.6	3213	11	1	+
17	TR-30A-MM	30	5B3, 17B1	1	46.3	3912	37	0	+
18	TR-81A-MM	81	14B,17A2	1	40.0	3483	31	0	+
19	TR-1164A-MM	1164	XC2, XD	1	48.6	3333	19	0	-
20	TR-1595A-MM	1595	XA3.2, XA6	1	38.8	3007	16	0	-
21	TR-1149A-MM	1149	XF1, XF3	1	45.8	5463	13	5	-
22	TR-1527A-MM	1527	XC2, XD	1	46.0	3120	12	0	+

Subfamilies ordered by number of arrays in WGS and then by unit length. N - row index; Unit (bp) - minimal unit length; Chromo Bands - chromosomal positions in the reference genome; Arrays - number of arrays of each subfamily found in both WGS; GC% - mean array GC content; Length (bp) - max array length; Var% - mean variability between monomers in array. ChrUn - number of arrays found in ChrUn; HOR - presence of HOR.
* There are several distinct arrays of TR-31C-MM in 9A2 locus in the reference genome.

ISSN: 1471-2164