Tandemly repeated DNA families in the mouse genome

BMC Genomics

Table 6 Single locus family

N	Subfamily	Unit (bp)	Chromo Bands	Arrays	GC%	Length	Var%	ChrUn	HOR
1	TR-17A-MM	17	17D	5	43.2	10312	33	0	+
2	TR-54B-MM	54	XA1.2	5	47.9	11978	31	0	-
3	TR-29A-MM	29	2F1	4	50.3	4175	26	0	+
4	TR-734A-MM	734	XC2	3	37.0	9507	22	0	+
5	TR-1870A-MM	1870	7D1	3	44.6	5795	3	8	-
6	TR-19A-MM	19	18A2	2	49.7	4883	32	0	+
7	TR-34A-MM	34	12F2	2	55.2	3354	7	0	-
8	TR-38A-MM	38	8C1	2	42.7	5426	25	0	+
9	TR-38B-MM	38	8C1	2	42.0	6113	25	0	+
10	TR-54A-MM	54	XA1.2	2	48.1	10744	30	0	-
11	TR-100A-MM	100	XA1.2	2	44.0	4364	26	0	-
12	TR-234A-MM	234	3F2.2	2	59.4	6878	5	0	-
13	TR-23A-MM	23	17B1	1	43.4	6018	13	0	-
14	TR-24C-MM	24	12F1	1	52.5	3298	9	0	-
15	TR-29B-MM	29	2F1	1	50.0	15896	30	0	+
16	TR-31D-MM	31	12A1.2	1	55.9	5175	24	1	+
17	TR-33A-MM	33	7B1	1	53.4	3601	17	0	-
18	TR-39A-MM	39	1C1.2	1	39.2	3387	5	0	-
19	TR-40A-MM	40	15A2	1	62.6	6612	21	0	+
20	TR-44A-MM	44	2H3	1	36.3	3016	9	0	-
21	TR-48A-MM	48	14D3	1	50.7	6603	28	0	-
22	TR-56A-MM	56	XA1.2	1	42.9	4194	22	0	+
23	TR-84A-MM	84	7E2	1	48.5	3040	9	0	-
24	TR-93A-MM	93	XC2	1	51.3	3124	24	3	-
25	TR-111A-MM	111	9F4	1	52.4	3347	22	0	-
26	TR-168A-MM	168	XA1.2	1	41.9	4046	23	0	-
27	TR-297A-MM	297	17E1.2	1	56.2	3100	19	0	-
28	TR-321A-MM	321	11E2	1	42.3	3152	21	0	+
29	TR-814A-MM	814	5A2	1	45.5	3175	3	0	-
30	TR-1146A-MM	1146	19B	1	47.5	3056	14	0	-
31	TR-1284A-MM	1284	10C3	1	42.3	5239	14	0	-
32	TR-1384A-MM	1384	XF1	1	25.8	3665	8	0	-
33	TR-1872A-MM	1872	9A4	1	42.5	4285	17	0	-
34	TR-1908A-MM	1908	2A2	1	39.8	4126	14	0	+

Subfamilies ordered by number of arrays in WGS and then by unit length. N - row index; Unit (bp) - minimal unit length; Chromo Bands - chromosomal positions in the reference genome; Arrays - number of arrays of each subfamily found in both WGS; GC% - mean array GC content; Length (bp) - max array length; Var% - mean variability between monomers in array. ChrUn - number of arrays found in ChrUn; HOR - presence of HOR.

ISSN: 1471-2164