Table 3 Lateral genetic transfer of global regulators within the E. coli - Shigella clade using an alternative definition of 'global regulator'.
TF name | Gene coding for the TF | Blattner number | Number of target genes | Is the corresponding protein tree concordant or discordant with the E. coli - Shigella MRP tree? | Evidence for internal recombination breakpoint(s)? |
|---|---|---|---|---|---|
CRP | crp | b3357 | 435 | Concordant | No |
FNR | fnr | b1334 | 282 | Concordant | No |
Fis | fis | b3261 | 225 | Concordant | No |
IHF | ihfA | b1712 | 217 | Concordant | No |
IHF | ihfB | b0912 | 217 | Discordant | No |
ArcA | arcA | b4401 | 158 | Concordant | No |
H-NS | hns | b1237 | 144 | Concordant | No |
Lrp | lrp | b0889 | 97 | Concordant | No |
NarL | narL | b1221 | 114 | Concordant | No |
Fur | fur | b0683 | 85 | Concordant | No |
CpxR | cpxR | b3912 | 56 | Concordant | No |
PhoB | phoB | b0399 | 37 | Concordant | No |
PurR | purR | b1658 | 31 | Concordant | No |
Rob | rob | b4396 | 18 | Concordant | No |
DgsA (Mlc) | dgsA | b1594 | 10 | Discordant | No |
CspA | cspA | b3556 | 3 | Concordant | No |
SoxR | soxR | b4063 | 3 | Discordant | No |