| Number or % of total |
---|---|
General features | Â |
   Chromosome size (bp) | 1,755,458 |
   G+C content | 46% |
   CDS numbers | 1,894 |
   Assigned function | 1,280 |
   Conserved hypothetical/hypothetical protein | 614 |
   Ribosomal RNA operons | 2 |
   tRNAs | 36 |
   Prophage | 1 |
   Genetic island | 1 |
   Number of plasmids (bp) | 1 (52,076) |
   IS elements | 5 |
   mini-IS elements | 22 |
   Simple sequence repeats (SSRs) | 80 |
mono ≥ 9 | 71 |
di ≥ 6 | 6 |
tetra ≥ 4 | 0 |
penta ≥ 4 | 2 |
hepta ≥ 4 | 1 |
RAST Subsystem Category Distribution* | Â |
   Cofactors, Vitamins, Prosthetic Groups, Pigments | 7.9% |
   Cell Wall and Capsule | 8.2% |
   Virulence, Disease and Defense | 1.6% |
   Potassium metabolism | 0.8% |
   Miscellaneous | 2.8% |
   Membrane Transport | 2.5% |
   Iron acquisition and metabolism | 0.3% |
   RNA Metabolism | 6.4% |
   Nucleosides and Nucleotides | 4.4% |
   Protein Metabolism | 18.1% |
   Cell Division and Cell Cycle | 1.7% |
   Motility and Chemotaxis | 5.9% |
   Regulation and Cell signaling | 0.3% |
   DNA Metabolism | 3.0% |
   Fatty Acids, Lipids, and Isoprenoids | 5.7% |
   Respiration | 5.9% |
   Stress Response | 2.4% |
   Metabolism of Aromatic Compounds | 0.6% |
   Amino Acids and Derivatives | 11.6% |
   Sulfur Metabolism | 0.3% |
   Phosphorus Metabolism | 0.6% |
   Carbohydrates | 8.8% |
Gene classes | Â |
   Chemotaxis proteins | 23 |
HAMP domain containg protein | 8 |
Methyl-accepting chemotaxis proteins (MCPs) | 20 |
HD domain containg protein | 2 |
Redox-sensing PAS domain proteins | 1 |
   Restriction/modification systems |  |
Type I | 1(on plasmid) |
Type II/IIS | 2 |
Type III | 1(partial) |
   Transcriptional regulators | 3(σ28 σ54 σ70) |
   Two-component systems |  |
Response regulator | 10 |
Sensor histidine kinase | 4 |