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Table 3 List of putative Helicobacter bizzozeronii secreted proteins predicted by PSORTbv3

From: Comparative Genomics of Helicobacter pylori and the human-derived Helicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans

CDS Locus_Tag Predicted function Localization Sec SP1 Tat SP2 SpII3 H. pylori orthologue
CDS Locus_tag
HBZC1_00340 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA Periplasmic + - - HP1252
HBZC1_00890 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular - - - (-)4
HBZC1_00900 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular + - - (-)
HBZC1_00910 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular + - - (-)
HBZC1_01330 Flagellar hook protein FlgE Extracellular - - - HP0870
HBZC1_01540 Flagellar hook-associated protein FlgK Extracellular - - - HP1119
HBZC1_01610 HtrA protease/chaperone protein/Serine protease Periplasmic + - - HP1019
HBZC1_02310 Membrane-anchored cell surface protein Extracellular - - - (-)
HBZC1_02430 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular + - - (-)
HBZC1_03080 Flagellar basal-body rod protein FlgC Periplasmic - - - HP1558
HBZC1_03090 Flagellar basal-body rod protein FlgB Periplasmic - - - HP1559
HBZC1_04310 Nitrate reductase cytochrome c550-type subunit Periplasmic + - - (-)
HBZC1_04340 Flagellin Extracellular - - - HP0115
HBZC1_05160 Soluble lytic murein transglycosylase Periplasmic + - - HP0649
HBZC1_05800 Cytochrome c551 peroxidase Periplasmic + - - HP1461
HBZC1_05960 Putative amino-acid transporter periplasmic solute-binding protein Periplasmic + - + HP1172
HBZC1_06690 Sel1 domain-containing protein repeat-containing protein Extracellular - - - (-)
HBZC1_07110 Flagellar hook-associated protein FlgL Extracellular - - - HP0295
HBZC1_07220 Hypothetical protein Extracellular + - + (-)
HBZC1_07230 Hypothetical protein Extracellular - - + (-)
HBZC1_07880 Hypothetical protein Extracellular - - - (-)
HBZC1_08080 Gamma-glutamyltranspeptidase Periplasmic + - - HP1118
HBZC1_08620 Flagellar hook-length control protein FliK Periplasmic - - - (-)
HBZC1_08630 Flagellar basal-body rod modification protein FlgD Periplasmic - - - HP0907
HBZC1_08640 Flagellar hook protein FlgE Extracellular - - - HP0908
HBZC1_08800 Periplasmic nitrate reductase Periplasmic - + - (-)
HBZC1_08840 Flagellar P-ring protein FlgI Periplasmic + - - HP0246
HBZC1_09700 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular + - + HPSH_03725
HBZC1_10550 Cytochrome c nitrite reductase subunit c552 Periplasmic + - - (-)
HBZC1_10810 trimethylamine-N-oxide reductase Periplasmic + - - HP0407
HBZC1_10890 mJ0042 family finger Extracellular - - - (-)
HBZC1_11140 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular + - - (-)
HBZC1_11160 Superoxide dismutase Periplasmic - - - HP0389
HBZC1_11330 YgjD/Kae1/Qri7 family protein Extracellular - - - HP1584
HBZC1_11450 Flagellar hook-associated protein FliD Extracellular - - - HP0752
HBZC1_12200 Hypothetical protein Extracellular - - - (-)
HBZC1_12220 Hypothetical protein Periplasmic + - - (-)
HBZC1_12240 Catalase Periplasmic - - - HP0875
HBZC1_12430 Nucleoside diphosphate kinase Extracellular - - - HP0198
HBZC1_13860 Cytochrome C553 (soluble cytochrome f) Periplasmic + - - jhp1148
HBZC1_13880 Flagellin Extracellular - - - HP0601
HBZC1_14010 Outer membrane protein Extracellular - - - (-)
HBZC1_14040 Flagellar basal-body rod protein FlgG Extracellular - - - HP1092
HBZC1_14510 TolB protein Periplasmic + - - HP1126
HBZC1_14760 Membrane-bound lytic murein transglycosylase D Periplasmic + - - HP1572
HBZC1_15010 Arginine decarboxylase Periplasmic - - - HP0422
HBZC1_16410 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular - - - (-)
HBZC1_16420 Hypothetical protein (sel 1 domain repeat containing protein) Extracellular - - - (-)
HBZC1_17210 Hypothetical protein Periplasmic - - - HPG27_960
HBZC1_17260 Endonuclease I Extracellular - - - (-)
  1. 1The Sec specific signal peptide predicted using SignalP-HMM (http://www.cbs.dtu.dk/services/SignalP/); probability score cut off 0,500
  2. 2The Tat specific signal peptide predicted using TatP 1.0 Server (http://www.cbs.dtu.dk/services/TatP/)
  3. 3The signal peptide SpII of lipoproteins was predicted using LipoP 1.0 Server (http://www.cbs.dtu.dk/services/LipoP/)
  4. 4No orthologues in H. pylori; BLASTP against nr database: two proteins with amino acid identity greater than 40% over 80% sequence length were considered homologues