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Figure 4 | BMC Genomics

Figure 4

From: RNA-Seq improves annotation of protein-coding genes in the cucumber genome

Figure 4

An example of WRKY gene prediction. An example of WRKY gene prediction with and without RNA-Seq reads. Green tracks are the WRKY genes predicted in annotVer 2.0. Yellow tracks are the WRKY genes predicted in annotVer 1.0. The purple track is the GeneWise alignment of proteins and the red track is shown for the transcripts generated by PASA from de novo contigs. The orange track shows the transcripts reconstructed by 'align-then-assemble' approach implemented by Cufflinks and the dark red track illustrates de novo contigs and ESTs of cucumber aligned by spaln. The blue track is the FL-cDNA of the cucumber WRKY assembly and gene aligned by spaln, and the two pink tracks are proteins and ESTs aligned by spaln.

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