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Table 1 Number of de novo assemblies and "align-then-assembled" transcripts.

From: RNA-Seq improves annotation of protein-coding genes in the cucumber genome

Tissues # RNA-Seq reads # De novo assembled transcripts Mapped reads # "Align-then-assembled" transcripts
Ovary 19, 247, 768 86, 994 17, 656, 392 (91.7%) 52, 530
Fertilized ovary 18, 466, 067 81, 650 17, 047, 763 (92.3%) 50, 987
Unfertilized ovary 19, 111, 746 84, 628 17, 394, 685 (91.0%) 52, 003
Root 18, 732, 466 86, 572 17, 162, 238 (91.6%) 52, 167
Stem 24, 535, 215 71, 977 22, 789, 659 (92.9%) 45, 710
Leaf 26, 400, 675 79, 344 24, 405, 569 (92.4%) 49, 351
Male flower 26, 050, 858 83, 957 24, 531, 662 (94.2%) 51, 630
Female flower 23, 818, 868 85, 345 21, 886, 487 (91.9%) 51, 701
Tendril 22, 472, 146 71, 489 20, 585, 234 (91.6%) 44, 658
Base part of tendril 21, 653, 855 70, 260 19, 556, 866 (90.3%) 44, 995