From: RNA-Seq improves annotation of protein-coding genes in the cucumber genome
Tissues | # RNA-Seq reads | # De novo assembled transcripts | Mapped reads | # "Align-then-assembled" transcripts |
---|---|---|---|---|
Ovary | 19, 247, 768 | 86, 994 | 17, 656, 392 (91.7%) | 52, 530 |
Fertilized ovary | 18, 466, 067 | 81, 650 | 17, 047, 763 (92.3%) | 50, 987 |
Unfertilized ovary | 19, 111, 746 | 84, 628 | 17, 394, 685 (91.0%) | 52, 003 |
Root | 18, 732, 466 | 86, 572 | 17, 162, 238 (91.6%) | 52, 167 |
Stem | 24, 535, 215 | 71, 977 | 22, 789, 659 (92.9%) | 45, 710 |
Leaf | 26, 400, 675 | 79, 344 | 24, 405, 569 (92.4%) | 49, 351 |
Male flower | 26, 050, 858 | 83, 957 | 24, 531, 662 (94.2%) | 51, 630 |
Female flower | 23, 818, 868 | 85, 345 | 21, 886, 487 (91.9%) | 51, 701 |
Tendril | 22, 472, 146 | 71, 489 | 20, 585, 234 (91.6%) | 44, 658 |
Base part of tendril | 21, 653, 855 | 70, 260 | 19, 556, 866 (90.3%) | 44, 995 |