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Table 1 Description of the 335 eQTLs localized on swine chromosomes.

From: Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism

 

eQTL

 
 

number of eQTL

clustered eQTL

cM

adjusted p-value

SSC1

49

6

83-101

NS

  

31

133-149

9.06E-61

SSC2

28

18

51-77

3.14E-12

SSC3

16

4

39-55

NS

SSC4

17

4

61-81

NS

  

5

100-131

NS

  

4

149-151

NS

SSC5

13

4

1-39

NS

  

5

100-150

NS

SSC6

13

5

20-60

NS

  

5

80-140

NS

SSC7

12

3

60-80

NS

  

6

160-end

NS

SSC8

23

5

0-60

NS

  

11

63-109

NS

  

8

125-180

NS

SSC9

6

   

SSC10

29

25

1-5

9.09E-38

SSC11

3

   

SSC12

5

   

SSC13

29

18

1-39

1.69E-06

  

5

85-120

NS

SSC14

7

5

40-60

NS

SSC15

6

   

SSC16

44

36

41-65

8.87E-68

SSC17

11

6

0-15

NS

SSC18

24

8

1-10

NS

  

15

20-55

0.00010

Total

335

242

  

Significant total

154

  

72

% of the eQTL are co-localized.

 

46

% of the eQTL are co-localized and this enrichment is significant at the chromosome level.

 
  1. The number of eQTLs is given for each chromosome. This number is in bold when the chromosome level is significantly high (Bonferroni-corrected p-value). The position of the clusters is given in cM (details are given in Additional files 1, 3 and 4).