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Table 4 SNP annotation

From: Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

  Fixed Segregating
  Large White Iberian Large White Iberian
Synonymous coding 2083 1727 1352 757
Non synonymous coding 1073 910 852 494
5' UTR 150 77 73 39
3' UTR 1187 1029 1004 622
Stop lost 3 1 0 4
Stop gained 1 3 7 9
Intronic 15101 13020 3388 2515
5'Upstream 2983 2588 1176 628
3'Downstream 9440 8549 5579 3831
Splice site 311 259 91 86
Non synonymous coding 1073 910 852 494
Within non coding gene 262 268 14 9
Intergenic 5847 5042 1539 1076
  1. The number of SNP is degenerated; each SNP can have more than one annotation.