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Figure 2 | BMC Genomics

Figure 2

From: Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

Figure 2

The overlapping of SNPs called by four pipelines and based on the UMD3.1 reference assembly. Left, homozygous; right, heterozygous. More than six millions unique SNP sites were identified by at least one of the aligners; 45.8% of them are consistent among all aligners. smalt, SMALT+SAMtools pipeline; bwa, BWA+SAMtools pipeline; clc, CLC Genomics Workbench; giga, Mosaik+GigaBayes pipeline.

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