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Figure 5 | BMC Genomics

Figure 5

From: Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

Figure 5

Interaction of SNP detection and CNVs. Bases within CNV (green) and heterozygous SNPs (red) regions called on chromosome 9 which contains the largest identical by descent (IBD) region (from 13.2 Mb to 105.6 Mb) in the bovine genome. Some common false positive peaks of heterozygous SNPs in this IBD region detected by all resequencing pipelines overlapped with the CNV regions described in this study and in other literature, indicating a higher FPR for the detection of small size polymorphism inside relatively larger structural variant regions.

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