Pipeline | Consistent | Homozygous > heterozygous | As indel | Inconsistent |
---|---|---|---|---|
BWA + SAMtools | 253,102 (99.9%) | 247 (0.1%) | 107 | 16 |
CLC Genomics Workbench | 254,195 (99.6%) | 848 (0.3%) | 101 | 28 |
Mosaik + GigaBayes | 236,261 (97.8%) | 3,522 (1.4%) | 1,860 (0.8%) | 20 |
SMALT + SAMtools | 247,805 (99.8%) | 272 (0.1%) | 96 | 19 |