Skip to main content

Table 1 Sequencing libraries and sequencing runs

From: Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

Library Run name Read length F3 reads R3 reads
Black Angus FR 50 solid_BA_FR1 50 nt 172,104,943 0
Black Angus FR 50 solid_BA_FR2 50 nt 225,062,253 0
Black Angus MP 25 solid_BA_MP1 25 nt 73,568,858 73,917,320
Black Angus MP 25 solid_BA_MP2 25 nt 76,123,158 76,573,521
Black Angus MP 25 solid_BA_MP3 25 nt 69,657,261 69,108,403
Black Angus MP 25 solid_BA_MP4 25 nt 356,566,421 356,848,504
Black Angus MP 50 solid_BA_MP5 50 nt 220,164,958 220,910,123
Black Angus MP 50 solid_BA_MP6 50 nt 78,350,806 80,494,794
Black Angus MP 50 solid_BA_MP7 50 nt 343,878,503 346,998,757
Holstein MP 50 solid_HOL_MP1 50 nt 140,503,099 142,438,241
Holstein MP 50 solid_HOL_MP2 50 nt 190,712,998 191,191,811
Holstein FR 50 solid_HOL_FR1 50 nt 172,127,298 0
Holstein FR 50 solid_HOL_FR2 50 nt 321,848,214 0
Holstein MP 25 solid_HOL_MP3 25 nt 160,118,556 159,430,437
Holstein MP 25 solid_HOL_MP4 25 nt 281,714,461 281,402,729
  1. Three libraries were constructed for each animal and sequenced using two or more instrument runs. The numbers of reads obtained for fragment libraries is given in the F3 reads column. Mate-paired libraries yielded two read types (F3 reads and R3 reads).