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Table 4 Comparison of genotypes from a custom array to sequencing SNPs

From: Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

Source of SNPs

SNPs tested

SNPs validated

Holstein

427

420 (98%)

Black Angus

422

415 (98%)

  1. To estimate the false positive rate of SNP discovery, a subset of the SNPs discovered by sequencing was genotyped in 1083 animals.
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BMC Genomics

ISSN: 1471-2164

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