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Table 6 Summary of CNVs

From: Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

BTA Chromosome length % length in CNV Total CNV length No. CNV Mean length Median length Max length Min length
1 161,106,243 0.028 44,913 11 4,083 4,148 7,151 2,861
2 140,800,416 0.102 143,068 32 4,471 4,865 10,257 2,629
3 127,923,604 0.135 173,057 27 6,410 5,435 28,029 2,861
4 124,454,208 0.000 0 0 0 0 0 0
5 125,847,759 0.246 309,452 51 6,068 6,435 19,448 2,860
6 122,561,022 0.292 358,280 56 6,398 5,610 20,911 2,549
7 112,078,216 0.243 272,175 95 2,865 3,421 9,881 1,901
8 116,942,821 0.163 190,373 37 5,145 5,131 13,111 2,849
9 108,145,351 0.057 61,772 14 4,412 3,949 7,051 2,821
10 106,383,598 0.090 96,123 25 3,845 3,727 8,481 2,569
11 110,171,769 0.075 82,123 31 2,649 2,813 4,499 2,249
12 85,358,539 0.255 217,445 49 4,438 5,005 9,731 2,781
13 84,419,198 0.180 152,086 64 2,376 2,758 3,939 1,969
14 81,345,643 0.113 91,924 26 3,536 3,752 5,628 2,680
15 84,633,453 0.125 106,076 30 3,536 3,611 10,209 2,489
16 77,906,053 0.039 30,688 6 5,115 3,562 14,248 2,740
17 76,506,943 0.048 36,720 11 3,338 3,510 6,480 2,700
18 66,141,439 0.851 563,154 120 4,693 6,100 18,405 2,141
19 65,312,493 0.035 22,660 6 3,777 2,987 6,723 2,489
20 75,796,353 0.036 27,332 8 3,416 3,589 4,141 2,761
21 69,173,390 0.064 44,293 13 3,407 3,568 5,413 2,461
22 61,848,140 0.031 19,408 4 4,852 4,033 8,821 2,521
23 53,376,148 0.095 50,750 12 4,229 3,500 12,000 2,500
24 65,020,233 0.053 34,298 10 3,430 3,307 5,389 2,449
25 44,060,403 0.000 0 0 0 0 0 0
26 51,750,746 0.134 69,401 33 2,103 2,301 2,761 1,841
27 48,749,334 0.144 70,250 14 5,018 4,126 20,071 2,231
28 46,084,206 0.045 20,587 5 4,117 3,943 5,913 2,409
29 51,998,940 0.000 0 0 0 0 0 0
TOTAL 2,545,896,661 0.129 3,288,408 790 4,163 3,171 28,029 1,841
  1. The distribution and size characteristics of CNVs detected through comparison of the Holstein and Black Angus read sets mapped to the Btau4.0 reference assembly.