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Table 7 CNVs selected for validation by qPCR

From: Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

CNV ID

Entrez Gene

Log2 ratio

P-value

Chr2_CNV_29

PLA2G2D1

-1.799

0

Chr3_CNV_18

LOC781675

0.813

3.06E-99

Chr5_CNV_6

-

0.871

3.44E-112

Chr5_CNV_46

-

2.777

0

Chr6_CNV_32

LOC785098

0.811

3.47E-141

Chr10_CNV_24

-

-2.954

0

Chr13_CNV_50

ATRN

0.858

4.00E-171

Chr15_CNV_26

-

0.806

3.79E-109

Chr18_CNV_75

-

0.951

1.64E-138

Chr24_CNV_6

SERPINB5

0.991

8.42E-164

  1. Five genic and five non-genic CNVs were selected for validation by qPCR. Entrez Gene names are given for genic CNVs. The log2 ratios and p-values obtained from the CNV-seq software are shown. Positive log2 ratios indicate higher read depth in the Holstein animal.
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BMC Genomics

ISSN: 1471-2164

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