From: Nuclear Receptor HNF4α Binding Sequences are Widespread in Alu Repeats
Sequence | PBM score | # in Alus | # in hg18 | % |
---|---|---|---|---|
TGACCTCGTGATC | 0.62 | 101229 | 101259 | 99.97 |
TGAACCCGGGAGG | 0.76 | 122111 | 122158 | 99.96 |
TGAACCTGGGAGG | 0.73 | 126196 | 126368 | 99.86 |
TGACCTCATGATC | 0.68 | 41447 | 41545 | 99.76 |
TGAACCCGGGAGA | 0.61 | 5700 | 5716 | 99.72 |
TGGGGTTTCACCG | 0.70 | 13385 | 13428 | 99.68 |
TGAACCCGGAAGG | 0.69 | 4520 | 4535 | 99.67 |
TGACCTTGTGATC | 0.64 | 40637 | 40786 | 99.63 |
TGAACTCGGGAGG | 0.82 | 6783 | 6810 | 99.60 |
GCACTTTGGGAGG | 0.84 | 469851 | 471728 | 99.60 |
TGAATCCGGGAGG | 0.72 | 5765 | 5789 | 99.59 |
ACACTTTGGGAGG | 0.69 | 38828 | 38993 | 99.58 |
GCACTTCGGGAGG | 0.87 | 8683 | 8721 | 99.56 |
TGACCTCGCGATC | 0.77 | 775 | 779 | 99.49 |
TGAACCCGAGAGG | 0.62 | 4133 | 4156 | 99.45 |
GTACTTTGGGAGG | 0.63 | 15294 | 15386 | 99.40 |
TGAACCCGGGGGG | 9.02 | 1319 | 1328 | 99.32 |
TGACCTTGCGATC | 0.73 | 411 | 414 | 99.28 |
TGACCTCGTGATT | 0.63 | 2863 | 2888 | 99.13 |
GCACTCTGGGAGG | 0.74 | 13202 | 13342 | 98.95 |
TGAGCCCGGGAGG | 0.71 | 5450 | 5517 | 98.79 |
TGAGCCTGGGAGG | 0.69 | 19616 | 19895 | 98.60 |
TGACCTCGTGACC | 0.67 | 1070 | 1088 | 98.35 |
TGACCTCGTGACC | 0.68 | 1070 | 1088 | 98.35 |
TGAACGCGGGAGG | 0.72 | 642 | 653 | 98.32 |
TGACCTCAAATGA | 0.63 | 8625 | 8779 | 98.25 |