Nuclear Receptor HNF4α Binding Sequences are Widespread in Alu Repeats

BMC Genomics

Table 4 Alu subfamilies in human genome (hg18) with HNF4α binding sites.

Alu	# with H4	# in hg18	%
AluYa5	3776	3851	98.05
AluYf5	173	178	97.19
AluY	112,814	118,382	95.30
AluYk4	1720	1831	93.94
AluSg	37,876	40,751	92.94
AluYb9	296	323	91.64
AluYb8	2526	2811	89.86
AluSc	30,426	33,886	89.79
AluSg7	7268	8207	88.56
AluSc8	19,011	21,491	88.46
AluSg4	6493	7347	88.38
AluYc3	492	566	86.93
AluSc5	5709	6766	84.38
AluYf4	1128	1353	83.37
AluSx3	23,542	28,952	81.31
AluSp	39,357	49,055	80.23
AluSx4	4499	5658	79.52
AluSq4	1086	1393	77.96
AluSq2	41,871	54,418	76.94
AluSq	16,472	21,472	76.71
AluYd8	167	221	75.57

ISSN: 1471-2164