| | | Classical Model | Interaction Model | Test Lean1/lean2 |
---|
oligo ID | HGNC | corr | location | maxLRT | location | maxLRT | DE | p-value |
---|
RIGG00027 | BPNT1 | -0.36 | 182 | 9.6* | 95 | 9.8+ | -/+ | + |
RIGG05332 | NULL | -0.39 | 178 | 6.3+ | 77 | 11.5* | -/+ | * |
RIGG07405 | P4HA2 | -0.38 | 185 | 7.3+ | 73 | 12.0* | -/+ | + |
RIGG12578 | NULL | -0.58 | 158 | 11.7* | 86 | 9.3+ | +/- | + |
- For each gene, are given the oligonucleotide identifier (oligo ID), the HGNC abbreviation (HGNC), the Pearson correlation with the abdominal fatness (corr), the maximum LRT location in cM and the maximum LRT (maxLRT) using either the classical model or the interaction model. The two last columns are related to the statistical test comparing the expression between the lean1 and the lean2 subtypes: the differential expression between the two subtypes (DE = lean1/lean2) and the p-value associated are indicated. * and +: p-value at the chromosome level <0.05 and <0.1 respectively.