Table 1 Peach genome scaffold information with the number of SNP's detected on each scaffold.
From: Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection
Scaffold ID | #SNPs w/quality > 100 | #SNPs w/quality > 200 | Scaffold length (nt) | Scaffold length (nt)/SNP > 100 | Scaffold length (nt)/SNP > 200 |
|---|---|---|---|---|---|
scaffold 1 | 1267 | 716 | 46,877,626 | 36,999 | 65,472 |
scaffold 2 | 1205 | 412 | 26,807,724 | 22,247 | 65,067 |
scaffold 3 | 499 | 241 | 22,025,550 | 44,140 | 91,392 |
scaffold 4 | 412 | 227 | 30,528,727 | 74,099 | 134,488 |
scaffold 5 | 698 | 357 | 18,502,877 | 26,508 | 51,829 |
scaffold 6 | 392 | 217 | 28,902,582 | 73,731 | 133,192 |
scaffold 7 | 862 | 414 | 22,790,193 | 26,39 | 55,049 |
scaffold 8 | 1266 | 459 | 21,829,753 | 17,43 | 47,559 |
scaffold 9 | 9 | 4 | 2,126,789 | 236,310 | 531,697 |
scaffold 10 | 0 | 0 | 851,981 | na | na |
scaffold 11 | 1 | 8 | 736,058 | 736,058 | 92,007 |
scaffold 12 | 27 | 8 | 675,284 | 25,011 | 84,411 |
scaffold 13 | 0 | 0 | 670,721 | na | na |
scaffold 14 | 1 | 0 | 575,512 | 575,512 | na |
scaffold 15 | 14 | 8 | 516,056 | 3861 | 64,507 |
scaffold 16 | 1 | 1 | 390,024 | 390,024 | 390,024 |
scaffold 17 | 0 | 0 | 370,749 | na | na |
scaffold 18 | 0 | 0 | 333,953 | na | na |
scaffold 22 | 0 | 0 | 167,479 | na | na |
scaffold 23 | 0 | 0 | 69,963 | na | na |
Total | 6654 | 3065 | 225,749,601 | ave. = 40,176 | ave. = 80,506 |