Maximum-likelihood (MtZoa+F model)
|
Amino acid data set, with Lingula
|
Additional file 2
| | | | | | |
<50
|
Maximum-likelihood (GTR model)
|
Nucleotide data set
|
Additional file 3
| | | |
<50
|
86
|
<50
| |
Maximum-likelihood (GTR model)
|
Nucleotide data set (Gblocks edited)
|
Additional file 4
| | | | |
<50
| | |
Maximum-likelihood (GTR model)
|
Nucleotide data set (direct nucleotide alignment)
|
Additional file 5
| | | | |
99
| | |
Maximum-likelihood (MtZoa+F model)
|
Amino acid data set
|
Additional file 6
| | | | |
52
| |
52
|
Maximum-likelihood (MtZoa+F model)
|
Amino acid data set (Gblocks edited)
|
Additional file 7
| | | |
<50
| |
<50
| |
Maximum-likelihood (GTR model)
|
1st and 2nd codon positions
|
5B
| | | |
<50
|
<50
|
<50
| |
nhPhyML
|
Nucleotide data set; starting tree GTR tree
|
Additional file 8
| | | |
x
| |
x
| |
nhPhyML
|
Nucleotide data set; starting tree CAT tree
|
Additional file 9
|
x
| | | | | | |
Bayesian (CAT model)
|
Amino acid data set
|
5A
| | |
0.84
| | | | |
Bayesian (CAT model)
|
Amino acid data set; 10 taxa with the most strongly differing amino acid composition excluded
|
Additional file 11
| | |
0.78
| | | |
0.58
|
Maximum-likelihood (MtZoa+F model)
|
Amino acid data set; 10 taxa with the most strongly differing amino acid composition excluded
|
Additional file 12
| |
<50
| | |
<50
| | |
Bayesian (CAT model)
|
Amino acid data set recoded using 9 minmax chi-squared bins'
|
Additional file 14
| | |
0.92
| | | | |
Maximum-likelihood (MULTIGAMMA model)
|
Amino acid data set recoded using 9 minmax chi-squared bins
|
Additional file 15
| | | | |
60
| | |
Bayesian (CAT model)
|
Amino acid data set recoded using 6 minmax chi-squared bins
|
Additional file 16
| | | | |
0.96
| | |
Maximum-likelihood (MULTIGAMMA model)
|
Amino acid data set recoded 6 minmax chi-squared bins
|
Additional file 17
| | | | |
<50
| |
<50
|
Bayesian (CAT model)
|
Amino acid data set recoded using Dayhoff groups
|
Additional file 18
| | | | | | | |
Maximum-likelihood (MULTIGAMMA model)
|
Amino acid data set recoded Dayhoff groups
|
Additional file 19
| | | | | | |
<50
|
Bayesian (CAT+BP model)
|
Amino acid data set
|
Additional file 20
| | |
0.63
| | | | |
Maximum-likelihood (GTR model)
|
Nucleotide data set, 20% of the alignment positions with highest sitewise rates removed
|
Additional file 21
| | | | |
98
| | |
Maximum-likelihood (MtZoa+F model)
|
Amino acid data set; 10% of the alignment positions with highest sitewise rates removed
|
Additional file 22
| | | | |
<50
| |
58
|