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Table 1 Comparison between RNA-seq [17] (48 h) and microarray data for Chlamydomonas reinhardtii cultures incubated under nitrogen starvation conditions For microarray data average values for important genes during 96 h starvation are displayed (24 h, 48 h, 72 h, 96 h).

From: Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii

Reporter Identifier Reporter Name Reporter Description Log2 ratio microarray Log2 ratio RNA seq
  nitrogen related genes   
182971 NSG13 "nitrogen-starved gametogenesis 13"... 5.0 3.6
184661 NIT1 "nitrate reductase"... 4.6 7.9
192085 NII1 "Nitrite reductase"... 4.4 7.7
205647 NIT2 "transcription factor regulating nitrogen metabolism"... 1.5 2.6
188890   "NADH nitrate reductase"... 3.0 5.2
156131 AMT4 "Ammonium transporter"... 5.1 7.2
158745 AMT1 "Ammonium transporter"... 3.1 5.5
133971 GLN1 Glutamine synthetase 0.9 1
129468 GLN2 Glutamine synthetase 0.1 -0.3
136895 GLN3 Glutamine synthetase 6.5 6.6
147483 GLN4 Glutamine synthetase 2.3 1
  photosynthetic related genes   
184724 LHCSR1 "stress-related chlorophyll a/b binding protein 1"... -2.4 -1.2
184731 LHCSR2 "Stress-related chlorophyll a/b binding protein 2"... 3.7 2.6
184730 LHCSR3 "Stress-related chlorophyll a/b binding protein 3"... 3.8 1.7
196341 PSBS1 "chloroplast Photosystem II-associated 22 kDa protein"... 2.0 6.9
171516 PSBS2 "chloroplast Photosystem II-associated 22 kDa protein"... -0.3  
196341 PSBX "4.1 kDa photosystem II subunit"... -2.1 6.9
205940 PSAL "Photosystem I reaction center subunit XI"... -2.4 0.0
192478 PSAK "photosystem I reaction center subunit psaK"... -2.3 -3.4
184810 LHCB4 "chlorophyll a-b binding protein of photosystem II"... -2.4 -2.3
187025 LHCA8 "light-harvesting protein of photosystem I"... -2.2 -4.6
192961 LHCA7 "light-harvesting protein of photosystem I"... -2.5 -5.0
186299 LHCA6 "light-harvesting protein of photosystem I"... -2.7 -5.4
153678 LHCA4 "light-harvesting protein of photosystem I"... -2.6 -4.5
206001 LHCA1 "light-harvesting protein of photosystem I"... -3.2  
184397 LHCBM3 "Light-harvesting complex II chlorophyll a-b binding protein M3"... -2.0 -3.7
184479 LHCBM9 "chlorophyll a-b binding protein of LHCII"... -0.2 -1.5
126810 NAB1 "nucleic acid binding protein"... -1.6 -4.1
  other genes   
185841 RDP3 "Rhodanese domain phosphatase"... 2.4 -3.4
196438 PTB5 "sodium/phosphate symporter"... 5.3 0.6
196465 PTB5 "sodium/phosphate symporter"... 4.3 1.7
183357 PTB3 "sodium/phosphate symporter"... 3.8 -0.6
96789 GPD4 "Glycerol-3-Phosphate Dehydrogenase/Dihydroxyacetone-3-Phosphate Reductase"... 2.8 1.4
146945 GPD1 "Glycerol-3-Phosphate Dehydrogenase/Dihydroxyacetone-3-phosphate Reductase"... 3.6 4.1
182461 GLD2 "glucose-6-phosphate dehydrogenase"... 2.3 4.1
191987 ARG1 "N-acetyl-gamma-glutamyl-phosphate reductase"... 2.8 0.8
R:191668/1 ICL1 "isocitrate lyase" 0.1 -5.8