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Table 2 Comparison between RNA seq [16] (24 h) and microarray data for Chlamydomonas reinhardtii cultures incubated under sulfur starvation conditions For microarray data average values for the genes during 96 h starvation are displayed (24 h, 48 h, 72 h, 96 h).

From: Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii

Reporter Identifier Reporter Name Reporter Description Log 2 ratio microarray Log 2 ratio RNA seq
  sulfur related genes   
59800 SUOX1 "sulfite oxidase"... 3.5 2.0
205505 SLT3 "sodium/sulfate co-transporter"... -4.5 -1.8
205506 SLT2 "sodium/sulfate co-transporter"... 2.1 -1.7
205507 SLT1 "sodium/sulfate co-transporter"... 3.1 6.9
206159 SIR1 "ferredoxin-sulfite reductase"... 1.7 2.0
55757 ARS2 "periplasmic arylsulfatase"... 5.4 8.2
205501 ARS1 "periplasmic arylsulfatase"... 4.3 6.3
133924 ATS2 "ATP-sulfurylase"... 4.0 2.8
175651 OASTL1 changed to ASL1 -1.2 -0.3
137329 ECP88 "88 kDa extracellular polypeptide"... 5.6 13.4
130684 ECP76 "76 kDa extracellular polypeptide"... 5.5 10.7
  photosynthetic genes   
182015 PSBX "4.1 kDa photosystem II subunit"... -3.1 -0.9
193847 PSAO "Photosystem I subunit O"... -3.5 -1.4
182959 PSAH "Subunit H of photosystem I"... -3.1 -1.4
187195 PRPL29 "Putative chloroplast ribosomal protein L29 -7.0 -2.3
184730 LHCSR3 "Stress-related chlorophyll a/b binding protein 3"... 3.9 2.3
184731 LHCSR2 "Stress-related chlorophyll a/b binding protein 2"... 2.4 2.1
184724 LHCSR1 "stress-related chlorophyll a/b binding protein 1"... 5.5 1.8
184479 LHCBM9 "chlorophyll a-b binding protein of LHCII"... 5.8 10.0
205757 LHCBM8 "chlorophyll a-b binding protein of LHCII"... -2.8 -0.5
184071 LHCBM7 "chlorophyll a-b binding protein of LHCII"... -2.6 -0.9
191690 LHCBM4 "chloropyll a-b binding protein of LHCII"... -2.9 -0.3
184397 LHCB5 "minor chlorophyll a-b binding protein of photosystem II" -3.2 -2.0
187025 LHCA8 "light-harvesting protein of photosystem I"... -2.9 -1.3
183363 LHCA7 "light-harvesting protein of photosystem I"... -3.5 -1.1
186299 LHCA5 "light-harvesting protein of photosystem I"... -3.5 -1.4
184471 LHCA1 "light-harvesting protein of photosystem I"... -3.1 -1.3
  other genes    
189430 CCP1 "low-CO2-inducible chloroplast envelope protein"... -2.5 -0.7
194325 LCI33 "low-CO2-inducible protein"... -2.3 1.7
55019 LCI1 "low-CO2-inducible membrane protein"... -2.1 -2.9
97127 EFG1 "chloroplast elongation factor G"... -2.9 -0.6
135322 CSP41b "chloroplast stem-loop-binding protein"... -2.5 0.4
205573 CSP41a "chloroplast stem-loop-binding protein"... -2.2 0.0
141844 CDJ4 "chloroplast DnaJ-like protein"... 2.6 0.8
134235 ATPC "chloroplast ATP synthase gamma chain"... -2.4 -0.4
81427 81427/1 "Chloroplast SRP54 Subunit of Signal Recognition Particle"... 2.2 -1.7
174103 IPY3 "soluble inorganic pyrophosphatase"... -2.3 -2.8
148916 ELI3 "Early light-inducible protein"... 2.0 2.9